miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 52829 0.72 0.645339
Target:  5'- ---uGGugGCCUGG-GgcGACGGCCa -3'
miRNA:   3'- auauUCugCGGGCCaCuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 95862 0.72 0.655586
Target:  5'- --cGAGGCG-CgGGUGcgGugGGCCGa -3'
miRNA:   3'- auaUUCUGCgGgCCACuaCugCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 137042 0.72 0.655586
Target:  5'- --gAGGugGCCgGgGUGGUGGCcGGCCu -3'
miRNA:   3'- auaUUCugCGGgC-CACUACUG-CCGGc -5'
21512 3' -55.5 NC_004812.1 + 103516 0.71 0.665814
Target:  5'- ---cGGAUGCUCGGggacGUGAUGGCCGu -3'
miRNA:   3'- auauUCUGCGGGCCac--UACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 33468 0.71 0.68618
Target:  5'- ----cGGCGCCCuGcgGcgGACGGCCGa -3'
miRNA:   3'- auauuCUGCGGGcCa-CuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 103265 0.71 0.696299
Target:  5'- ---cAGGCGCgCGGgGgcGACGGCCGc -3'
miRNA:   3'- auauUCUGCGgGCCaCuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 68452 0.71 0.706365
Target:  5'- --aGGGGCuCCCGGUGGUGgccGCGGCgCGc -3'
miRNA:   3'- auaUUCUGcGGGCCACUAC---UGCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 4952 0.71 0.706365
Target:  5'- --gAGGGCGgCCGGcg--GGCGGCCGg -3'
miRNA:   3'- auaUUCUGCgGGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 130460 0.71 0.706365
Target:  5'- --gAGGGCGgCCGGcg--GGCGGCCGg -3'
miRNA:   3'- auaUUCUGCgGGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 29840 0.71 0.706365
Target:  5'- --aGAGGCGCcacCCGGUGGccUGA-GGCCGg -3'
miRNA:   3'- auaUUCUGCG---GGCCACU--ACUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 80244 0.7 0.716368
Target:  5'- ----cGGCGCCCuGGgGgcGGCGGCCGc -3'
miRNA:   3'- auauuCUGCGGG-CCaCuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 98508 0.7 0.726298
Target:  5'- --cGGGGCGCCgGGUcccgGGCGGCCc -3'
miRNA:   3'- auaUUCUGCGGgCCAcua-CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 113034 0.7 0.736147
Target:  5'- ---cGGGCGCgCCGGacg-GACGGCCGc -3'
miRNA:   3'- auauUCUGCG-GGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 28642 0.7 0.745904
Target:  5'- gAUGGGggccuccgacGCGCCCGccgGAcUGGCGGCCGg -3'
miRNA:   3'- aUAUUC----------UGCGGGCca-CU-ACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 39015 0.7 0.755562
Target:  5'- --gGAGGCGCUgcuugaugggggCGGUGGUGACGagcacGCCGu -3'
miRNA:   3'- auaUUCUGCGG------------GCCACUACUGC-----CGGC- -5'
21512 3' -55.5 NC_004812.1 + 30760 0.7 0.755562
Target:  5'- ----cGAUGCCCGGggccGcgGGCGaGCCGg -3'
miRNA:   3'- auauuCUGCGGGCCa---CuaCUGC-CGGC- -5'
21512 3' -55.5 NC_004812.1 + 112702 0.7 0.755562
Target:  5'- --gGAGGCcUCCGGcgGAgagGGCGGCCGg -3'
miRNA:   3'- auaUUCUGcGGGCCa-CUa--CUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 140074 0.7 0.76511
Target:  5'- --gAGGACGCcguuggguCCGGUGAUGAgCGcGCCc -3'
miRNA:   3'- auaUUCUGCG--------GGCCACUACU-GC-CGGc -5'
21512 3' -55.5 NC_004812.1 + 79612 0.69 0.77454
Target:  5'- ---cAGcACgGCCgCGGUGAgGGCGGCCGu -3'
miRNA:   3'- auauUC-UG-CGG-GCCACUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 122422 0.69 0.77454
Target:  5'- ---uGGACGCgCGGUGGgcccgGGCGGCg- -3'
miRNA:   3'- auauUCUGCGgGCCACUa----CUGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.