miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 150585 0.66 0.951936
Target:  5'- cGGCGGGCuccucGACggGGcGGCGCcgccGCGCGCc -3'
miRNA:   3'- -CUGUCUGc----UUGuaCC-CUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 6442 0.66 0.955898
Target:  5'- cGGCGGGgGGACcgccGGGACGacCGCGgGCc -3'
miRNA:   3'- -CUGUCUgCUUGua--CCCUGC--GUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 24856 0.66 0.955898
Target:  5'- cGCGGGCGGcGCGgcugcgGGGGCGUccucgAgGCGCa -3'
miRNA:   3'- cUGUCUGCU-UGUa-----CCCUGCG-----UgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 101954 0.66 0.955512
Target:  5'- gGGCGG-CGGGCGUcaGGGGcCGCGgacgcccgccgccCGCGCg -3'
miRNA:   3'- -CUGUCuGCUUGUA--CCCU-GCGU-------------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 97679 0.66 0.964485
Target:  5'- -cCAGGCGGcccccgccgagaccgGCuucgaggGGGACGUgGCGCGCg -3'
miRNA:   3'- cuGUCUGCU---------------UGua-----CCCUGCG-UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128009 0.66 0.955898
Target:  5'- cGCGGGCGGGCGagucGGcGGCGCGgccgucgaGCGCg -3'
miRNA:   3'- cUGUCUGCUUGUa---CC-CUGCGUg-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 6682 0.66 0.951936
Target:  5'- gGAUGGACG-ACAgGGGGCGUGUGUGUu -3'
miRNA:   3'- -CUGUCUGCuUGUaCCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 77840 0.66 0.947742
Target:  5'- -cCAGGCGucCA-GGG-CGC-CGCGCa -3'
miRNA:   3'- cuGUCUGCuuGUaCCCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 41732 0.66 0.947742
Target:  5'- cGGCguGGugGuGACG-GGGGUGCGCGUGCg -3'
miRNA:   3'- -CUG--UCugC-UUGUaCCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 37584 0.66 0.947742
Target:  5'- -gUAGACGGGCcgGuGGcCGCcCGCGUu -3'
miRNA:   3'- cuGUCUGCUUGuaC-CCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 132945 0.66 0.947742
Target:  5'- -cUAGGCG-ACcgGGGACGC-CGCc- -3'
miRNA:   3'- cuGUCUGCuUGuaCCCUGCGuGCGcg -5'
21519 3' -54.3 NC_004812.1 + 145131 0.66 0.951936
Target:  5'- --gAGGCGAGCGgcGGGcUGUACGUGUg -3'
miRNA:   3'- cugUCUGCUUGUa-CCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128560 0.66 0.955898
Target:  5'- aGCGcGGCGAGCAggaaGGaGAgGCcgccGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUa---CC-CUgCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 10778 0.66 0.955898
Target:  5'- aGACAGucccCGGGCGUGGGcCGCcgacccCGcCGCc -3'
miRNA:   3'- -CUGUCu---GCUUGUACCCuGCGu-----GC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 107978 0.66 0.947742
Target:  5'- gGAUAGAgaGGCG-GGGcguuccCGCACGCGCg -3'
miRNA:   3'- -CUGUCUgcUUGUaCCCu-----GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 95532 0.66 0.951936
Target:  5'- cGGCgGGGCG-GCccGGGGCGU-CGCGCc -3'
miRNA:   3'- -CUG-UCUGCuUGuaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 112861 0.66 0.951527
Target:  5'- -cCAGACGAaaccggcgccgccGCGaGGGACGgGCG-GCg -3'
miRNA:   3'- cuGUCUGCU-------------UGUaCCCUGCgUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 98669 0.66 0.947742
Target:  5'- cGCGGGgguCGAGCc-GGGGCGgGCGCGg -3'
miRNA:   3'- cUGUCU---GCUUGuaCCCUGCgUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 66967 0.66 0.947742
Target:  5'- cGGCGauGGCGcACAUGGGGuCGCAgaacaUGUGCu -3'
miRNA:   3'- -CUGU--CUGCuUGUACCCU-GCGU-----GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 149559 0.66 0.947742
Target:  5'- -cUAGGCG-ACggGGGACGCcgccccuCGCGUc -3'
miRNA:   3'- cuGUCUGCuUGuaCCCUGCGu------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.