miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 45 0.69 0.840427
Target:  5'- cGGCGGgccGCGGGCGcGGcGGCGCggcgccacGCGCGCg -3'
miRNA:   3'- -CUGUC---UGCUUGUaCC-CUGCG--------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 90 0.67 0.928592
Target:  5'- -cCGGGCGGGCucccGGcccCGCGCGCGCc -3'
miRNA:   3'- cuGUCUGCUUGua--CCcu-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 91 0.81 0.277052
Target:  5'- cGAgGGACGGGCc-GGGGCGCGCGCGg -3'
miRNA:   3'- -CUgUCUGCUUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 1610 0.68 0.911704
Target:  5'- -cCGGGCGccccgcGCGaGGGAcCGUGCGCGCg -3'
miRNA:   3'- cuGUCUGCu-----UGUaCCCU-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2033 0.67 0.933739
Target:  5'- cGGCGGGCcucggucGGCGgcggGGGGCGCgggggaggggGCGCGCc -3'
miRNA:   3'- -CUGUCUGc------UUGUa---CCCUGCG----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2310 0.75 0.557793
Target:  5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3'
miRNA:   3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2346 0.72 0.690714
Target:  5'- cGCGGGCGGcaggGCGUcGGGCccgGCGCGCGCg -3'
miRNA:   3'- cUGUCUGCU----UGUAcCCUG---CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2501 0.66 0.955898
Target:  5'- cGCGGGCGGGCGagucGGcGGCGCGgccgucgaGCGCg -3'
miRNA:   3'- cUGUCUGCUUGUa---CC-CUGCGUg-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 2568 0.71 0.750363
Target:  5'- cGGCAGgggcACGGGCGUGucGGGCccgaggcgcguGCGCGCGCg -3'
miRNA:   3'- -CUGUC----UGCUUGUAC--CCUG-----------CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2799 0.71 0.778897
Target:  5'- gGGCAGGuaGACGUGGcGGCGCGCGacgGCg -3'
miRNA:   3'- -CUGUCUgcUUGUACC-CUGCGUGCg--CG- -5'
21519 3' -54.3 NC_004812.1 + 3051 0.66 0.955898
Target:  5'- aGCGcGGCGAGCAggaaGGaGAgGCcgccGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUa---CC-CUgCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 3094 0.72 0.740629
Target:  5'- aGGCGGGCgGGGCggGGGAgGCGC-CGCc -3'
miRNA:   3'- -CUGUCUG-CUUGuaCCCUgCGUGcGCG- -5'
21519 3' -54.3 NC_004812.1 + 3276 0.69 0.856406
Target:  5'- cGCGcGGCGAGCGaGGccaGCGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUaCCcugCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 3469 0.69 0.863332
Target:  5'- cGGCGGGCGGucgcgccgucagcGCGgcGGGcCGCGgGCGCg -3'
miRNA:   3'- -CUGUCUGCU-------------UGUa-CCCuGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 3576 0.76 0.498422
Target:  5'- gGGCAGGCGGcgGCGgcgGcGGGCGgGCGCGCc -3'
miRNA:   3'- -CUGUCUGCU--UGUa--C-CCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 4269 0.69 0.864092
Target:  5'- cGGCGGcguucucgcGCGccAGCA-GGGGCGCguACGCGCg -3'
miRNA:   3'- -CUGUC---------UGC--UUGUaCCCUGCG--UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 4325 0.82 0.227381
Target:  5'- aGACGGGCGAcaucgggGCcuacguggugcucGUGGGGCGCGCGUGCa -3'
miRNA:   3'- -CUGUCUGCU-------UG-------------UACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 4583 0.69 0.840427
Target:  5'- aGCAGGCGcGugAUGaGGGCGUAcugcCGCGCc -3'
miRNA:   3'- cUGUCUGC-UugUAC-CCUGCGU----GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 4628 0.66 0.955898
Target:  5'- -uCGGGCGcccACAcGGG-CGCGgGCGCg -3'
miRNA:   3'- cuGUCUGCu--UGUaCCCuGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 4633 0.76 0.488791
Target:  5'- gGGCGGGgGGGC--GGGACGCcCGCGCg -3'
miRNA:   3'- -CUGUCUgCUUGuaCCCUGCGuGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.