miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 127818 0.75 0.557793
Target:  5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3'
miRNA:   3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 104616 0.76 0.488791
Target:  5'- cGCAGACGAugAUGcGGAUGUugGUGg -3'
miRNA:   3'- cUGUCUGCUugUAC-CCUGCGugCGCg -5'
21519 3' -54.3 NC_004812.1 + 151702 0.76 0.488791
Target:  5'- cGCAG-CGAGC--GGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUCuGCUUGuaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 4633 0.76 0.488791
Target:  5'- gGGCGGGgGGGC--GGGACGCcCGCGCg -3'
miRNA:   3'- -CUGUCUgCUUGuaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 129084 0.76 0.498422
Target:  5'- gGGCAGGCGGcgGCGgcgGcGGGCGgGCGCGCc -3'
miRNA:   3'- -CUGUCUGCU--UGUa--C-CCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 58253 0.76 0.517929
Target:  5'- -cCAGcACGAcCAUGGGGCGCGCG-GCc -3'
miRNA:   3'- cuGUC-UGCUuGUACCCUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 140865 0.76 0.517929
Target:  5'- cGCAGGCGcGCAaggcgcgggggUGGGugGCgggACGCGCg -3'
miRNA:   3'- cUGUCUGCuUGU-----------ACCCugCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155558 0.75 0.537734
Target:  5'- gGGCGGGgGAGgGgggaGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUgCUUgUa---CCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 68178 0.75 0.551751
Target:  5'- cGGCGGccGCGGGCG-GGGGCGCgccggacgcccggccGCGCGCg -3'
miRNA:   3'- -CUGUC--UGCUUGUaCCCUGCG---------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 49570 0.77 0.460445
Target:  5'- -cCAGuACGAGCAgggccUGGGGCuGCugGCGCa -3'
miRNA:   3'- cuGUC-UGCUUGU-----ACCCUG-CGugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 105192 0.77 0.442038
Target:  5'- uGCcuGCGAGCGcGGGGCGCGgGCGCg -3'
miRNA:   3'- cUGucUGCUUGUaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 121013 0.77 0.421396
Target:  5'- cGCGcGGCGGGCcgGGGGCGCuccccucggcgccgGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGuaCCCUGCG--------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155722 0.81 0.25794
Target:  5'- gGGgGGugGGGgGUGGGGgGCGCGCGCg -3'
miRNA:   3'- -CUgUCugCUUgUACCCUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 91 0.81 0.277052
Target:  5'- cGAgGGACGGGCc-GGGGCGCGCGCGg -3'
miRNA:   3'- -CUgUCUGCUUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 156501 0.81 0.277052
Target:  5'- cGAgGGACGGGCc-GGGGCGCGCGCGg -3'
miRNA:   3'- -CUgUCUGCUUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 74348 0.81 0.28367
Target:  5'- ---cGACGAGCA-GGGGCGCGgGCGCg -3'
miRNA:   3'- cuguCUGCUUGUaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 154970 0.8 0.297278
Target:  5'- gGACGGGCGGGCcgcgcGGGACcCGCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGua---CCCUGcGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 145724 0.79 0.333495
Target:  5'- uGACGGACGcccgaacgcggcGACccGGGGCGCGCGgGCg -3'
miRNA:   3'- -CUGUCUGC------------UUGuaCCCUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 156136 0.79 0.364726
Target:  5'- uGACGGgccgcGCGGACGcGGGGCGCgggACGCGCg -3'
miRNA:   3'- -CUGUC-----UGCUUGUaCCCUGCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 97383 0.78 0.406518
Target:  5'- cGCGGucGCGGGCGUGGG-CGCGCGgGCc -3'
miRNA:   3'- cUGUC--UGCUUGUACCCuGCGUGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.