miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 99576 0.71 0.738075
Target:  5'- uGGGGUCgcagucggucggcggGGCCUCGGGga--UCCGCa -3'
miRNA:   3'- gCCCCAG---------------CCGGAGCUUauagAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 147503 0.7 0.743844
Target:  5'- gGGGGUCcgguGGCCcCGAGgcgccGUCUUCGCGc -3'
miRNA:   3'- gCCCCAG----CCGGaGCUUa----UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 11988 0.7 0.772135
Target:  5'- gCGGGGuUCcGCCggCGGGcuccgGUCUCCGCGg -3'
miRNA:   3'- -GCCCC-AGcCGGa-GCUUa----UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 105840 0.7 0.790401
Target:  5'- gCGGGGuucaucUCGGCCUCGGGgacGUCggaCgGCGg -3'
miRNA:   3'- -GCCCC------AGCCGGAGCUUa--UAGa--GgUGC- -5'
21524 3' -55.7 NC_004812.1 + 60541 0.69 0.79933
Target:  5'- gCGGuGGUUGGCgUUGAAgggaUCCGCGa -3'
miRNA:   3'- -GCC-CCAGCCGgAGCUUauagAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 79025 0.69 0.806368
Target:  5'- gGGGGUCGGCUggcugggGUCgggggCCGCGg -3'
miRNA:   3'- gCCCCAGCCGGagcuua-UAGa----GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 18873 0.69 0.808112
Target:  5'- cCGGGGgucggCGGCCcgCGG--GUCgCCGCGg -3'
miRNA:   3'- -GCCCCa----GCCGGa-GCUuaUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 108919 0.69 0.808112
Target:  5'- cCGGGGgcccgCGGCCgCGggUuuccccCUCUACGu -3'
miRNA:   3'- -GCCCCa----GCCGGaGCuuAua----GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 121812 0.69 0.816737
Target:  5'- gCGGGGgCGGCCUCGGAgg-CggaggCCGgGc -3'
miRNA:   3'- -GCCCCaGCCGGAGCUUauaGa----GGUgC- -5'
21524 3' -55.7 NC_004812.1 + 152713 0.69 0.816737
Target:  5'- gCGGGGgCGGCCUCGGAgg-CggaggCCGgGc -3'
miRNA:   3'- -GCCCCaGCCGGAGCUUauaGa----GGUgC- -5'
21524 3' -55.7 NC_004812.1 + 101176 0.69 0.820142
Target:  5'- aGGcGG-CGGCCUCGggUccgGUCUgcggggccaggggccCCGCGg -3'
miRNA:   3'- gCC-CCaGCCGGAGCuuA---UAGA---------------GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 2242 0.69 0.825199
Target:  5'- gGGGGUCucgggGGUCUCGGggGUCUCgGgGg -3'
miRNA:   3'- gCCCCAG-----CCGGAGCUuaUAGAGgUgC- -5'
21524 3' -55.7 NC_004812.1 + 33143 0.69 0.825199
Target:  5'- gGGGGUCucgggGGUCUCGGggGUCUCgGgGg -3'
miRNA:   3'- gCCCCAG-----CCGGAGCUuaUAGAGgUgC- -5'
21524 3' -55.7 NC_004812.1 + 102919 0.68 0.841602
Target:  5'- uCGGGGgggCGGCCgCGAAcgagagCCGCGg -3'
miRNA:   3'- -GCCCCa--GCCGGaGCUUauaga-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 78795 0.68 0.841602
Target:  5'- gGGGGUCGGCCggcuggggUCGGggGUCggCCGg- -3'
miRNA:   3'- gCCCCAGCCGG--------AGCUuaUAGa-GGUgc -5'
21524 3' -55.7 NC_004812.1 + 78717 0.68 0.841602
Target:  5'- gGGGGUCGGCCggcuggggUCGGggGUCggCCGg- -3'
miRNA:   3'- gCCCCAGCCGG--------AGCUuaUAGa-GGUgc -5'
21524 3' -55.7 NC_004812.1 + 53334 0.68 0.848744
Target:  5'- gGGGGUCGGCggagggcUUCGGG-GUCgccgCCGCGu -3'
miRNA:   3'- gCCCCAGCCG-------GAGCUUaUAGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 151728 0.68 0.849529
Target:  5'- cCGGGaGUgaGGCCUCGuuguuUCUCgCGCGg -3'
miRNA:   3'- -GCCC-CAg-CCGGAGCuuau-AGAG-GUGC- -5'
21524 3' -55.7 NC_004812.1 + 120827 0.68 0.849529
Target:  5'- cCGGGaGUgaGGCCUCGuuguuUCUCgCGCGg -3'
miRNA:   3'- -GCCC-CAg-CCGGAGCuuau-AGAG-GUGC- -5'
21524 3' -55.7 NC_004812.1 + 81589 0.68 0.857263
Target:  5'- gGGGGUCGGCUcgggCGAcgAggUCgGCGa -3'
miRNA:   3'- gCCCCAGCCGGa---GCUuaUagAGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.