Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21524 | 3' | -55.7 | NC_004812.1 | + | 44882 | 1.1 | 0.003221 |
Target: 5'- aCGGGGUCGGCCUCGAAUAUCUCCACGa -3' miRNA: 3'- -GCCCCAGCCGGAGCUUAUAGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 2287 | 0.82 | 0.194316 |
Target: 5'- gGGGGUCucgggGGUCUCGGggGUCUCCGCGg -3' miRNA: 3'- gCCCCAG-----CCGGAGCUuaUAGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 33188 | 0.82 | 0.194316 |
Target: 5'- gGGGGUCucgggGGUCUCGGggGUCUCCGCGg -3' miRNA: 3'- gCCCCAG-----CCGGAGCUuaUAGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 60997 | 0.78 | 0.341526 |
Target: 5'- aCGGccacGUUGGCCUCGAAUccgcUCUCCACGg -3' miRNA: 3'- -GCCc---CAGCCGGAGCUUAu---AGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 38602 | 0.77 | 0.405814 |
Target: 5'- gGGGGUCGcGCCgaguccgcggCGGggGUCUCCGCGc -3' miRNA: 3'- gCCCCAGC-CGGa---------GCUuaUAGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 7701 | 0.77 | 0.405814 |
Target: 5'- gGGGGUCGcGCCgaguccgcggCGGggGUCUCCGCGc -3' miRNA: 3'- gCCCCAGC-CGGa---------GCUuaUAGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 54226 | 0.75 | 0.477198 |
Target: 5'- aCGGGGgcgCGGuCCUCGAAgAUCcCCAUGa -3' miRNA: 3'- -GCCCCa--GCC-GGAGCUUaUAGaGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 66949 | 0.74 | 0.534575 |
Target: 5'- gGGGGUCGaCCUCGA---UCUCgGCGa -3' miRNA: 3'- gCCCCAGCcGGAGCUuauAGAGgUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 38422 | 0.74 | 0.534575 |
Target: 5'- aGGGGUUGGCCgcgUCGAccggCUCCugGu -3' miRNA: 3'- gCCCCAGCCGG---AGCUuauaGAGGugC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 88231 | 0.73 | 0.574148 |
Target: 5'- aGGGGUCGGCCaUCGcggg-CUCCAa- -3' miRNA: 3'- gCCCCAGCCGG-AGCuuauaGAGGUgc -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 26072 | 0.72 | 0.644676 |
Target: 5'- gCGGaGGU-GGCuCUCGAAcGUCUCCGCc -3' miRNA: 3'- -GCC-CCAgCCG-GAGCUUaUAGAGGUGc -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 68244 | 0.72 | 0.654773 |
Target: 5'- cCGGGGccUCGGCCUCGAcguccUCgUCCAgGg -3' miRNA: 3'- -GCCCC--AGCCGGAGCUuau--AG-AGGUgC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 26265 | 0.72 | 0.654773 |
Target: 5'- uCGGGGgacgCGGCCgcgCGggUGcC-CCGCGg -3' miRNA: 3'- -GCCCCa---GCCGGa--GCuuAUaGaGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 55009 | 0.71 | 0.684926 |
Target: 5'- uCGGGG-CGGCgcagCUCGAcu-UCUCCGCa -3' miRNA: 3'- -GCCCCaGCCG----GAGCUuauAGAGGUGc -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 78318 | 0.71 | 0.704828 |
Target: 5'- gCGGGGgcggagggccCGGCCUCGGGc--CUCCugGa -3' miRNA: 3'- -GCCCCa---------GCCGGAGCUUauaGAGGugC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 13450 | 0.71 | 0.714694 |
Target: 5'- cCGGcGUUGGCCgCGAuccacuUCUCCACGg -3' miRNA: 3'- -GCCcCAGCCGGaGCUuau---AGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 56223 | 0.71 | 0.715677 |
Target: 5'- aGGGcGUCGGCCUCGcggcgcgccgacUCgUCCGCGg -3' miRNA: 3'- gCCC-CAGCCGGAGCuuau--------AG-AGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 78041 | 0.71 | 0.724491 |
Target: 5'- gGGGGUggcccgcaggCGGCgCUCGAg---CUCCGCGa -3' miRNA: 3'- gCCCCA----------GCCG-GAGCUuauaGAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 124198 | 0.71 | 0.735178 |
Target: 5'- cCGGGGaCGGCCccgUGAAUAauucacgacgguuggCUCCGCGg -3' miRNA: 3'- -GCCCCaGCCGGa--GCUUAUa--------------GAGGUGC- -5' |
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21524 | 3' | -55.7 | NC_004812.1 | + | 155099 | 0.71 | 0.735178 |
Target: 5'- cCGGGGaCGGCCccgUGAAUAauucacgacgguuggCUCCGCGg -3' miRNA: 3'- -GCCCCaGCCGGa--GCUUAUa--------------GAGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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