miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 101229 0.66 0.917336
Target:  5'- aGGGGcgccgcgcCGGCCUCGAcgGg--CCGCa -3'
miRNA:   3'- gCCCCa-------GCCGGAGCUuaUagaGGUGc -5'
21524 3' -55.7 NC_004812.1 + 26083 0.66 0.922882
Target:  5'- cCGGGGucgUCGGCCUCGGA---CUCgGa- -3'
miRNA:   3'- -GCCCC---AGCCGGAGCUUauaGAGgUgc -5'
21524 3' -55.7 NC_004812.1 + 108560 0.66 0.922882
Target:  5'- gGGGGUgaugaaGGCC-CGGGcGUCggCCACGa -3'
miRNA:   3'- gCCCCAg-----CCGGaGCUUaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 92398 0.66 0.922338
Target:  5'- uGGGGUCGagcaCCUUGGcgcccugGUAUC-CCACGu -3'
miRNA:   3'- gCCCCAGCc---GGAGCU-------UAUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 32085 0.66 0.928196
Target:  5'- uGGGGccCGGCCcCGGAgGUCgCCugGu -3'
miRNA:   3'- gCCCCa-GCCGGaGCUUaUAGaGGugC- -5'
21524 3' -55.7 NC_004812.1 + 25837 0.66 0.942739
Target:  5'- -uGGGUCGccGCCUCGAAgaacgCCAUGa -3'
miRNA:   3'- gcCCCAGC--CGGAGCUUauagaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 105668 0.66 0.917336
Target:  5'- aGGGGacgggCGGCCgCGGAguuccggGUUUUCGCGg -3'
miRNA:   3'- gCCCCa----GCCGGaGCUUa------UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 76745 0.66 0.917336
Target:  5'- gCGGccgccguGUCGGCCgUCGggUG-CUCCAgGg -3'
miRNA:   3'- -GCCc------CAGCCGG-AGCuuAUaGAGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 97117 0.66 0.917336
Target:  5'- gGGGGcCGcGCCgccgCGGcgGcgcgccUCUCCGCGg -3'
miRNA:   3'- gCCCCaGC-CGGa---GCUuaU------AGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 69917 0.66 0.942739
Target:  5'- gCGGGGgugCGGCCggggCGuuc-UCUCCGg- -3'
miRNA:   3'- -GCCCCa--GCCGGa---GCuuauAGAGGUgc -5'
21524 3' -55.7 NC_004812.1 + 95278 0.66 0.938124
Target:  5'- gGGGuGUgGGCCgCGGuggcUCUCCACc -3'
miRNA:   3'- gCCC-CAgCCGGaGCUuau-AGAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 38969 0.66 0.933276
Target:  5'- aCGGGcacGUCGGCCUCc-GUGUCggCCAg- -3'
miRNA:   3'- -GCCC---CAGCCGGAGcuUAUAGa-GGUgc -5'
21524 3' -55.7 NC_004812.1 + 129022 0.66 0.922882
Target:  5'- cCGGGGccggCGGCCcCGGGgg-CggggCCGCGg -3'
miRNA:   3'- -GCCCCa---GCCGGaGCUUauaGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 69294 0.66 0.922882
Target:  5'- aCGGGGcUCGcCCUCGGcgAcCUCgACGa -3'
miRNA:   3'- -GCCCC-AGCcGGAGCUuaUaGAGgUGC- -5'
21524 3' -55.7 NC_004812.1 + 14574 0.66 0.933276
Target:  5'- aGGGG-CaGGCCcgCGGGcGUCUCCAgCGc -3'
miRNA:   3'- gCCCCaG-CCGGa-GCUUaUAGAGGU-GC- -5'
21524 3' -55.7 NC_004812.1 + 64150 0.66 0.942739
Target:  5'- uCGGGGaCGGCggcgCGGcgGgCUCCGCGc -3'
miRNA:   3'- -GCCCCaGCCGga--GCUuaUaGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 77981 0.66 0.938124
Target:  5'- -cGGGcCGGCCuUCGAGcg-CUCCAgGa -3'
miRNA:   3'- gcCCCaGCCGG-AGCUUauaGAGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 123511 0.66 0.928196
Target:  5'- cCGGGGcuccaaGGCCgCGAGagggCUCCAUGg -3'
miRNA:   3'- -GCCCCag----CCGGaGCUUaua-GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 123898 0.66 0.933276
Target:  5'- aCGGGG-CGGCCcCGAc-GUCcgCCAUGc -3'
miRNA:   3'- -GCCCCaGCCGGaGCUuaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 115543 0.66 0.928196
Target:  5'- aGGGGg-GGCCUCGAGagaCUCCcCu -3'
miRNA:   3'- gCCCCagCCGGAGCUUauaGAGGuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.