miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 108919 0.69 0.808112
Target:  5'- cCGGGGgcccgCGGCCgCGggUuuccccCUCUACGu -3'
miRNA:   3'- -GCCCCa----GCCGGaGCuuAua----GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 56223 0.71 0.715677
Target:  5'- aGGGcGUCGGCCUCGcggcgcgccgacUCgUCCGCGg -3'
miRNA:   3'- gCCC-CAGCCGGAGCuuau--------AG-AGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 78041 0.71 0.724491
Target:  5'- gGGGGUggcccgcaggCGGCgCUCGAg---CUCCGCGa -3'
miRNA:   3'- gCCCCA----------GCCG-GAGCUuauaGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 124198 0.71 0.735178
Target:  5'- cCGGGGaCGGCCccgUGAAUAauucacgacgguuggCUCCGCGg -3'
miRNA:   3'- -GCCCCaGCCGGa--GCUUAUa--------------GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 99576 0.71 0.738075
Target:  5'- uGGGGUCgcagucggucggcggGGCCUCGGGga--UCCGCa -3'
miRNA:   3'- gCCCCAG---------------CCGGAGCUUauagAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 147503 0.7 0.743844
Target:  5'- gGGGGUCcgguGGCCcCGAGgcgccGUCUUCGCGc -3'
miRNA:   3'- gCCCCAG----CCGGaGCUUa----UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 60541 0.69 0.79933
Target:  5'- gCGGuGGUUGGCgUUGAAgggaUCCGCGa -3'
miRNA:   3'- -GCC-CCAGCCGgAGCUUauagAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 79025 0.69 0.806368
Target:  5'- gGGGGUCGGCUggcugggGUCgggggCCGCGg -3'
miRNA:   3'- gCCCCAGCCGGagcuua-UAGa----GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 18873 0.69 0.808112
Target:  5'- cCGGGGgucggCGGCCcgCGG--GUCgCCGCGg -3'
miRNA:   3'- -GCCCCa----GCCGGa-GCUuaUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 13450 0.71 0.714694
Target:  5'- cCGGcGUUGGCCgCGAuccacuUCUCCACGg -3'
miRNA:   3'- -GCCcCAGCCGGaGCUuau---AGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 55009 0.71 0.684926
Target:  5'- uCGGGG-CGGCgcagCUCGAcu-UCUCCGCa -3'
miRNA:   3'- -GCCCCaGCCG----GAGCUuauAGAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 68244 0.72 0.654773
Target:  5'- cCGGGGccUCGGCCUCGAcguccUCgUCCAgGg -3'
miRNA:   3'- -GCCCC--AGCCGGAGCUuau--AG-AGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 60997 0.78 0.341526
Target:  5'- aCGGccacGUUGGCCUCGAAUccgcUCUCCACGg -3'
miRNA:   3'- -GCCc---CAGCCGGAGCUUAu---AGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 7701 0.77 0.405814
Target:  5'- gGGGGUCGcGCCgaguccgcggCGGggGUCUCCGCGc -3'
miRNA:   3'- gCCCCAGC-CGGa---------GCUuaUAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 54226 0.75 0.477198
Target:  5'- aCGGGGgcgCGGuCCUCGAAgAUCcCCAUGa -3'
miRNA:   3'- -GCCCCa--GCC-GGAGCUUaUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 38422 0.74 0.534575
Target:  5'- aGGGGUUGGCCgcgUCGAccggCUCCugGu -3'
miRNA:   3'- gCCCCAGCCGG---AGCUuauaGAGGugC- -5'
21524 3' -55.7 NC_004812.1 + 66949 0.74 0.534575
Target:  5'- gGGGGUCGaCCUCGA---UCUCgGCGa -3'
miRNA:   3'- gCCCCAGCcGGAGCUuauAGAGgUGC- -5'
21524 3' -55.7 NC_004812.1 + 88231 0.73 0.574148
Target:  5'- aGGGGUCGGCCaUCGcggg-CUCCAa- -3'
miRNA:   3'- gCCCCAGCCGG-AGCuuauaGAGGUgc -5'
21524 3' -55.7 NC_004812.1 + 26072 0.72 0.644676
Target:  5'- gCGGaGGU-GGCuCUCGAAcGUCUCCGCc -3'
miRNA:   3'- -GCC-CCAgCCG-GAGCUUaUAGAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 26265 0.72 0.654773
Target:  5'- uCGGGGgacgCGGCCgcgCGggUGcC-CCGCGg -3'
miRNA:   3'- -GCCCCa---GCCGGa--GCuuAUaGaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.