miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 2242 0.69 0.825199
Target:  5'- gGGGGUCucgggGGUCUCGGggGUCUCgGgGg -3'
miRNA:   3'- gCCCCAG-----CCGGAGCUuaUAGAGgUgC- -5'
21524 3' -55.7 NC_004812.1 + 2287 0.82 0.194316
Target:  5'- gGGGGUCucgggGGUCUCGGggGUCUCCGCGg -3'
miRNA:   3'- gCCCCAG-----CCGGAGCUuaUAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 3514 0.66 0.922882
Target:  5'- cCGGGGccggCGGCCcCGGGgg-CggggCCGCGg -3'
miRNA:   3'- -GCCCCa---GCCGGaGCUUauaGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 7701 0.77 0.405814
Target:  5'- gGGGGUCGcGCCgaguccgcggCGGggGUCUCCGCGc -3'
miRNA:   3'- gCCCCAGC-CGGa---------GCUuaUAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 9769 0.67 0.886157
Target:  5'- gCGGcgcgccGG-CGGCCgcgCGggUGUC-CCGCGg -3'
miRNA:   3'- -GCC------CCaGCCGGa--GCuuAUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 10937 0.67 0.892844
Target:  5'- aGGGGUCGcGauaUCGGcucGUGUCaUCCGCGc -3'
miRNA:   3'- gCCCCAGC-Cgg-AGCU---UAUAG-AGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 11988 0.7 0.772135
Target:  5'- gCGGGGuUCcGCCggCGGGcuccgGUCUCCGCGg -3'
miRNA:   3'- -GCCCC-AGcCGGa-GCUUa----UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 13275 0.67 0.901831
Target:  5'- uCGGGGcggcggaGGCCUCGGcgcggcggggcguccGcGUCUCCGCc -3'
miRNA:   3'- -GCCCCag-----CCGGAGCU---------------UaUAGAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 13327 0.66 0.938124
Target:  5'- gGGGGUCGGgggugCGGcgGUCccuUCCGCGc -3'
miRNA:   3'- gCCCCAGCCgga--GCUuaUAG---AGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 13360 0.66 0.938124
Target:  5'- gGGGGUCGGgggugCGGcgGUCccuUCCGCGc -3'
miRNA:   3'- gCCCCAGCCgga--GCUuaUAG---AGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 13450 0.71 0.714694
Target:  5'- cCGGcGUUGGCCgCGAuccacuUCUCCACGg -3'
miRNA:   3'- -GCCcCAGCCGGaGCUuau---AGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 14574 0.66 0.933276
Target:  5'- aGGGG-CaGGCCcgCGGGcGUCUCCAgCGc -3'
miRNA:   3'- gCCCCaG-CCGGa-GCUUaUAGAGGU-GC- -5'
21524 3' -55.7 NC_004812.1 + 15255 0.68 0.864798
Target:  5'- gGGGGUCuGGaa-CGggU-UCUCCACGa -3'
miRNA:   3'- gCCCCAG-CCggaGCuuAuAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 17037 0.67 0.911557
Target:  5'- aGGGGUCGgcggggggcGCCUCGGucccggCcgCCGCGg -3'
miRNA:   3'- gCCCCAGC---------CGGAGCUuaua--Ga-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 18873 0.69 0.808112
Target:  5'- cCGGGGgucggCGGCCcgCGG--GUCgCCGCGg -3'
miRNA:   3'- -GCCCCa----GCCGGa-GCUuaUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 21614 0.66 0.925036
Target:  5'- cCGGGcgaGUCGGCCcggCGGcgcucggccgagcugGUGUCcgCCACGa -3'
miRNA:   3'- -GCCC---CAGCCGGa--GCU---------------UAUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 22419 0.68 0.872129
Target:  5'- cCGGGGcCGGuCCUCGcgGAgcucGUCUCCGg- -3'
miRNA:   3'- -GCCCCaGCC-GGAGC--UUa---UAGAGGUgc -5'
21524 3' -55.7 NC_004812.1 + 22564 0.67 0.899309
Target:  5'- uCGaGGUCGGCCUCGG---UUUCCGg- -3'
miRNA:   3'- -GCcCCAGCCGGAGCUuauAGAGGUgc -5'
21524 3' -55.7 NC_004812.1 + 25185 0.68 0.864798
Target:  5'- cCGGGG-CGGCgUCGcggcggCUCCGCc -3'
miRNA:   3'- -GCCCCaGCCGgAGCuuaua-GAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 25837 0.66 0.942739
Target:  5'- -uGGGUCGccGCCUCGAAgaacgCCAUGa -3'
miRNA:   3'- gcCCCAGC--CGGAGCUUauagaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.