Results 1 - 20 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 124056 | 0.66 | 0.783982 |
Target: 5'- cGC-GGCCaACGGGGGAg--CGgCGCg -3' miRNA: 3'- aCGaCCGGaUGCUCCCUagaGCgGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 4386 | 0.66 | 0.774794 |
Target: 5'- -cCUGGCCgagGCGucgcccGGGuGGUCcCGCCGCa -3' miRNA: 3'- acGACCGGa--UGC------UCC-CUAGaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 24487 | 0.66 | 0.783982 |
Target: 5'- gGC-GGCCgcuccuggACGGGGGGcCcccgCGCCGCg -3' miRNA: 3'- aCGaCCGGa-------UGCUCCCUaGa---GCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 70034 | 0.66 | 0.783982 |
Target: 5'- cGC-GGacagGCGGGGGcgCUCGCCGa -3' miRNA: 3'- aCGaCCgga-UGCUCCCuaGAGCGGUg -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 94344 | 0.66 | 0.783982 |
Target: 5'- cGC-GGCCUGCGcGGGGcgggcggcGUUggagCGCCGCc -3' miRNA: 3'- aCGaCCGGAUGC-UCCC--------UAGa---GCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 61706 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 149353 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 149556 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 48347 | 0.66 | 0.793035 |
Target: 5'- gGCggacGCCgcCGAGGGcUC-CGCCGCg -3' miRNA: 3'- aCGac--CGGauGCUCCCuAGaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 123678 | 0.66 | 0.773869 |
Target: 5'- gGCUGGCCccgauggUGCGAccGGAgcuuuaUUCGCCGCg -3' miRNA: 3'- aCGACCGG-------AUGCUc-CCUa-----GAGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 107158 | 0.66 | 0.810707 |
Target: 5'- aGCUGGUC-GCGAGuGGUCUcuugCGCCGg -3' miRNA: 3'- aCGACCGGaUGCUCcCUAGA----GCGGUg -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 154579 | 0.66 | 0.773869 |
Target: 5'- gGCUGGCCccgauggUGCGAccGGAgcuuuaUUCGCCGCg -3' miRNA: 3'- aCGACCGG-------AUGCUc-CCUa-----GAGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 13284 | 0.66 | 0.783982 |
Target: 5'- cGgaGGCCUcggcGCGGcGGGGcguccgcgUCUCcGCCGCg -3' miRNA: 3'- aCgaCCGGA----UGCU-CCCU--------AGAG-CGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 35287 | 0.66 | 0.774794 |
Target: 5'- -cCUGGCCgagGCGucgcccGGGuGGUCcCGCCGCa -3' miRNA: 3'- acGACCGGa--UGC------UCC-CUAGaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 81407 | 0.66 | 0.774794 |
Target: 5'- gGCcGcCCUGCGGGaGGcgCUCGCgGCa -3' miRNA: 3'- aCGaCcGGAUGCUC-CCuaGAGCGgUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 137853 | 0.66 | 0.810707 |
Target: 5'- cGCUGGCgacggACGAGGug---CGCCGCg -3' miRNA: 3'- aCGACCGga---UGCUCCcuagaGCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 58684 | 0.66 | 0.810707 |
Target: 5'- gGCUGGCUggaGCccGGGggCUUGCCGu -3' miRNA: 3'- aCGACCGGa--UGcuCCCuaGAGCGGUg -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 114637 | 0.66 | 0.774794 |
Target: 5'- cGCUGGCCcgugAUGAGGacGUCggugcggccCGCCACc -3' miRNA: 3'- aCGACCGGa---UGCUCCc-UAGa--------GCGGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 154957 | 0.66 | 0.783982 |
Target: 5'- cGC-GGCCaACGGGGGAg--CGgCGCg -3' miRNA: 3'- aCGaCCGGaUGCUCCCUagaGCgGUG- -5' |
|||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 96721 | 0.66 | 0.774794 |
Target: 5'- gUGCcgGGCC-ACGAGGGc-CggGCCGCg -3' miRNA: 3'- -ACGa-CCGGaUGCUCCCuaGagCGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home