miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 3' -58.5 NC_004812.1 + 99963 0.68 0.687547
Target:  5'- gUGCcggugGGCCgugccgGCGGGGGccaggcagCUCGCCAg -3'
miRNA:   3'- -ACGa----CCGGa-----UGCUCCCua------GAGCGGUg -5'
21531 3' -58.5 NC_004812.1 + 119782 0.69 0.616809
Target:  5'- gUGCccgggGGCCUGCcccGGGGUCUgccUGCCGCc -3'
miRNA:   3'- -ACGa----CCGGAUGcu-CCCUAGA---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 45252 0.69 0.644174
Target:  5'- aGCUGGgCgACGAgcuggggggcccgcGGGGUCggCGCCGCc -3'
miRNA:   3'- aCGACCgGaUGCU--------------CCCUAGa-GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 90935 0.69 0.647213
Target:  5'- aGCgGGCCUugGcGGGcgCUCucCCGCg -3'
miRNA:   3'- aCGaCCGGAugCuCCCuaGAGc-GGUG- -5'
21531 3' -58.5 NC_004812.1 + 35615 0.69 0.647213
Target:  5'- gUGCgccgGGCCgaacGCGGGGGAggguugacgUGCCGCg -3'
miRNA:   3'- -ACGa---CCGGa---UGCUCCCUaga------GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 127650 0.68 0.667437
Target:  5'- gGgaGGCCccGCGGGcGGggCUCGCgGCg -3'
miRNA:   3'- aCgaCCGGa-UGCUC-CCuaGAGCGgUG- -5'
21531 3' -58.5 NC_004812.1 + 72337 0.68 0.668445
Target:  5'- gGCgGGCCgcgggggggagggggGgCGGGGGGUCUC-CCGCg -3'
miRNA:   3'- aCGaCCGGa--------------U-GCUCCCUAGAGcGGUG- -5'
21531 3' -58.5 NC_004812.1 + 77394 0.68 0.676504
Target:  5'- gGC-GGCCaggucgGCGGGGGccuccagGUCUCGcCCGCg -3'
miRNA:   3'- aCGaCCGGa-----UGCUCCC-------UAGAGC-GGUG- -5'
21531 3' -58.5 NC_004812.1 + 154847 0.68 0.67751
Target:  5'- cGCggGGCgcggCUGCGAGGGGgcgcgggCUCggGCCGCg -3'
miRNA:   3'- aCGa-CCG----GAUGCUCCCUa------GAG--CGGUG- -5'
21531 3' -58.5 NC_004812.1 + 128604 0.69 0.596584
Target:  5'- gGCgGGCgggGCGGGGGAgg-CGCCGCc -3'
miRNA:   3'- aCGaCCGga-UGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 85695 0.7 0.556493
Target:  5'- cGCUGGCggccagacCUGCGGGGGcggcccaCUgGCCGCa -3'
miRNA:   3'- aCGACCG--------GAUGCUCCCua-----GAgCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 152958 0.7 0.556493
Target:  5'- cUGCUGGCCgacgcagACGcGGGcgg-CGCCGCg -3'
miRNA:   3'- -ACGACCGGa------UGCuCCCuagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 87903 0.73 0.398864
Target:  5'- gUGCUGGCggGCGAGGaGUCgcggCGCUGCg -3'
miRNA:   3'- -ACGACCGgaUGCUCCcUAGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 136566 0.73 0.407351
Target:  5'- gGCcugaUGGCCUACc-GGGAcgCUCGCCGCc -3'
miRNA:   3'- aCG----ACCGGAUGcuCCCUa-GAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 52952 0.72 0.424661
Target:  5'- aGCUGGCCcucgACGAGGGGcC-CGCCc- -3'
miRNA:   3'- aCGACCGGa---UGCUCCCUaGaGCGGug -5'
21531 3' -58.5 NC_004812.1 + 16922 0.72 0.460555
Target:  5'- cGCaUGGCCUGCGAGGuGcggcaggCUacgCGCCACa -3'
miRNA:   3'- aCG-ACCGGAUGCUCC-Cua-----GA---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 125304 0.72 0.460555
Target:  5'- cGCggaaGGCCUGCGcgcguGGGGggCggggCGCCGCg -3'
miRNA:   3'- aCGa---CCGGAUGC-----UCCCuaGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 37814 0.71 0.497992
Target:  5'- ---cGGCCaUGCacuccucGGGGAUCUCGCCGCc -3'
miRNA:   3'- acgaCCGG-AUGc------UCCCUAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 9872 0.71 0.507565
Target:  5'- cGCccGCCUugGAcuggacGGGGUUUCGCCGCc -3'
miRNA:   3'- aCGacCGGAugCU------CCCUAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 84981 0.7 0.556493
Target:  5'- uUGgaGGCCUcgACGAuGGGGUCcUGUCGCg -3'
miRNA:   3'- -ACgaCCGGA--UGCU-CCCUAGaGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.