miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 3' -58.5 NC_004812.1 + 40957 1.09 0.00156
Target:  5'- gUGCUGGCCUACGAGGGAUCUCGCCACu -3'
miRNA:   3'- -ACGACCGGAUGCUCCCUAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 131862 0.79 0.167726
Target:  5'- cGC-GGUCUACGAGGuGAUC-CGCCGCa -3'
miRNA:   3'- aCGaCCGGAUGCUCC-CUAGaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 142190 0.75 0.299316
Target:  5'- cGCUGGCCgGCGcGGGG-CUgGCCGCc -3'
miRNA:   3'- aCGACCGGaUGCuCCCUaGAgCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 43685 0.74 0.33369
Target:  5'- cUGCgcgGGCCgcgcugccuucgcgGCGAGGGcgcuccgucgccgucGUCUCGCCGCc -3'
miRNA:   3'- -ACGa--CCGGa-------------UGCUCCC---------------UAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 142662 0.73 0.390491
Target:  5'- gUGUUGGUCUGCGuGGG--CUCGcCCACg -3'
miRNA:   3'- -ACGACCGGAUGCuCCCuaGAGC-GGUG- -5'
21531 3' -58.5 NC_004812.1 + 87903 0.73 0.398864
Target:  5'- gUGCUGGCggGCGAGGaGUCgcggCGCUGCg -3'
miRNA:   3'- -ACGACCGgaUGCUCCcUAGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 136566 0.73 0.407351
Target:  5'- gGCcugaUGGCCUACc-GGGAcgCUCGCCGCc -3'
miRNA:   3'- aCG----ACCGGAUGcuCCCUa-GAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 52952 0.72 0.424661
Target:  5'- aGCUGGCCcucgACGAGGGGcC-CGCCc- -3'
miRNA:   3'- aCGACCGGa---UGCUCCCUaGaGCGGug -5'
21531 3' -58.5 NC_004812.1 + 125304 0.72 0.460555
Target:  5'- cGCggaaGGCCUGCGcgcguGGGGggCggggCGCCGCg -3'
miRNA:   3'- aCGa---CCGGAUGC-----UCCCuaGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 16922 0.72 0.460555
Target:  5'- cGCaUGGCCUGCGAGGuGcggcaggCUacgCGCCACa -3'
miRNA:   3'- aCG-ACCGGAUGCUCC-Cua-----GA---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 156205 0.72 0.460555
Target:  5'- cGCggaaGGCCUGCGcgcguGGGGggCggggCGCCGCg -3'
miRNA:   3'- aCGa---CCGGAUGC-----UCCCuaGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 48181 0.72 0.469778
Target:  5'- aGgUGGCCUcggcguCGAGGG-UCcgCGCCACg -3'
miRNA:   3'- aCgACCGGAu-----GCUCCCuAGa-GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 106580 0.71 0.479094
Target:  5'- cGCcagggGGCCcGCGGGGGGgagCGCCGCc -3'
miRNA:   3'- aCGa----CCGGaUGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 135365 0.71 0.4885
Target:  5'- cGCUucuggGGCC-ACGGGGaGGUCccgUCGCCGCg -3'
miRNA:   3'- aCGA-----CCGGaUGCUCC-CUAG---AGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 37814 0.71 0.497992
Target:  5'- ---cGGCCaUGCacuccucGGGGAUCUCGCCGCc -3'
miRNA:   3'- acgaCCGG-AUGc------UCCCUAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 17827 0.71 0.507565
Target:  5'- cGC-GGCC-ACGAcccaggcggccGGGAUCgagCGCCACa -3'
miRNA:   3'- aCGaCCGGaUGCU-----------CCCUAGa--GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 95561 0.71 0.507565
Target:  5'- gGCgacGCCgACGuGGcGGUCUCGCCGCu -3'
miRNA:   3'- aCGac-CGGaUGCuCC-CUAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 9872 0.71 0.507565
Target:  5'- cGCccGCCUugGAcuggacGGGGUUUCGCCGCc -3'
miRNA:   3'- aCGacCGGAugCU------CCCUAGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 14537 0.71 0.526939
Target:  5'- aGCUgGGCCgcgaccGCGGGGGcgggCUCGUCGCc -3'
miRNA:   3'- aCGA-CCGGa-----UGCUCCCua--GAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 150684 0.71 0.526939
Target:  5'- gUGCccgggGGCCUGCccGGGGUCUgccUGCCGCc -3'
miRNA:   3'- -ACGa----CCGGAUGcuCCCUAGA---GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.