Results 1 - 20 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21533 | 3' | -58.7 | NC_004812.1 | + | 106974 | 0.66 | 0.817151 |
Target: 5'- ------cCCCaggggcgCCUCCCCCUCCCg-- -3' miRNA: 3'- gaaagaaGGGa------GGAGGGGGAGGGgag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 50056 | 0.66 | 0.808569 |
Target: 5'- -------gCCUCCUCCCUcagCUCCCCg- -3' miRNA: 3'- gaaagaagGGAGGAGGGG---GAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 24327 | 0.66 | 0.806834 |
Target: 5'- aCUUUCUUaCCC-CC-CCCCCaccaccacacaCCCUCg -3' miRNA: 3'- -GAAAGAA-GGGaGGaGGGGGag---------GGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 110088 | 0.66 | 0.799833 |
Target: 5'- -gUUCgcggCCCUgCUCCCCCagacgacCCCCg- -3' miRNA: 3'- gaAAGaa--GGGAgGAGGGGGa------GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 84268 | 0.66 | 0.799833 |
Target: 5'- ------cCCCgCC-CCCCCUCCCCc- -3' miRNA: 3'- gaaagaaGGGaGGaGGGGGAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 120927 | 0.66 | 0.79095 |
Target: 5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3' miRNA: 3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 151828 | 0.66 | 0.79095 |
Target: 5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3' miRNA: 3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 132482 | 0.66 | 0.79095 |
Target: 5'- ---cCUUCCC-CCaCCCCCgCCCCcaUCg -3' miRNA: 3'- gaaaGAAGGGaGGaGGGGGaGGGG--AG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 112307 | 0.66 | 0.781929 |
Target: 5'- -----cUCCCUCUccgCCCCCgCCCCg- -3' miRNA: 3'- gaaagaAGGGAGGa--GGGGGaGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 63102 | 0.66 | 0.781929 |
Target: 5'- ---cCUUCuCCUUCUCUCCCggCCgCUCu -3' miRNA: 3'- gaaaGAAG-GGAGGAGGGGGa-GGgGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 122153 | 0.66 | 0.772777 |
Target: 5'- --gUCgUUCCCU--UCCCCCUCCCa-- -3' miRNA: 3'- gaaAG-AAGGGAggAGGGGGAGGGgag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 52405 | 0.66 | 0.772777 |
Target: 5'- ---cCUUCCCcCCgcucgcucucgCUCCCUCCCCg- -3' miRNA: 3'- gaaaGAAGGGaGGa----------GGGGGAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 7386 | 0.66 | 0.771855 |
Target: 5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3' miRNA: 3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 38287 | 0.66 | 0.771855 |
Target: 5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3' miRNA: 3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 38993 | 0.67 | 0.763504 |
Target: 5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3' miRNA: 3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 8092 | 0.67 | 0.763504 |
Target: 5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3' miRNA: 3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 112702 | 0.67 | 0.76257 |
Target: 5'- -cUUCUUCUacgccccggaccaCUUCUCCCCCUgcgCCgCCUCc -3' miRNA: 3'- gaAAGAAGG-------------GAGGAGGGGGA---GG-GGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 146092 | 0.67 | 0.754118 |
Target: 5'- aCUUUCccgCCCccgCCUCCggcuuCUCUCCCCUa -3' miRNA: 3'- -GAAAGaa-GGGa--GGAGG-----GGGAGGGGAg -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 146499 | 0.67 | 0.754118 |
Target: 5'- --cUUUUCCCuUCCUCaCCUCUCaCCCcCa -3' miRNA: 3'- gaaAGAAGGG-AGGAG-GGGGAG-GGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 29047 | 0.67 | 0.744628 |
Target: 5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3' miRNA: 3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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