Results 1 - 20 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21533 | 3' | -58.7 | NC_004812.1 | + | 154641 | 0.75 | 0.321373 |
Target: 5'- ------cCCCUCC-CCCCCUCCCCcCg -3' miRNA: 3'- gaaagaaGGGAGGaGGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 154556 | 0.67 | 0.744628 |
Target: 5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3' miRNA: 3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 153496 | 0.78 | 0.196058 |
Target: 5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3' miRNA: 3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 151828 | 0.66 | 0.79095 |
Target: 5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3' miRNA: 3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 151379 | 0.7 | 0.555857 |
Target: 5'- uCUUgugCUUCUC-CCgggagCCCCCgCCCCUCu -3' miRNA: 3'- -GAAa--GAAGGGaGGa----GGGGGaGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 151326 | 0.73 | 0.424958 |
Target: 5'- -cUUCUccUCCCgggCCUCCCCC-CgCCUCc -3' miRNA: 3'- gaAAGA--AGGGa--GGAGGGGGaGgGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 151270 | 0.69 | 0.605686 |
Target: 5'- --cUC-UCCCgggCCUCCCCC-CgCCUCc -3' miRNA: 3'- gaaAGaAGGGa--GGAGGGGGaGgGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 150594 | 0.72 | 0.451545 |
Target: 5'- --gUCgcugCCCgCgUCCCCCuUCCCCUCg -3' miRNA: 3'- gaaAGaa--GGGaGgAGGGGG-AGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 150551 | 0.75 | 0.314234 |
Target: 5'- ---cCUUCgCCUCCgCCgCCUUCCCCUCg -3' miRNA: 3'- gaaaGAAG-GGAGGaGG-GGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 150522 | 0.74 | 0.358872 |
Target: 5'- ----gUUCCCgCCgacCCCCUUCCCCUCg -3' miRNA: 3'- gaaagAAGGGaGGa--GGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 150504 | 0.91 | 0.029172 |
Target: 5'- uCUUUCUUUCCUuucucuccCCUCCCCCUCCCCUCc -3' miRNA: 3'- -GAAAGAAGGGA--------GGAGGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 150485 | 0.74 | 0.336012 |
Target: 5'- ------cCCCcCCUCCCCCUCCCCc- -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 150465 | 0.69 | 0.645928 |
Target: 5'- ------gCCC-CCgacCCCCUUCCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149970 | 0.78 | 0.221375 |
Target: 5'- --aUC-UCCC-CCaCCCCCUCCCCUCu -3' miRNA: 3'- gaaAGaAGGGaGGaGGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149899 | 0.69 | 0.645928 |
Target: 5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3' miRNA: 3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149672 | 0.67 | 0.715623 |
Target: 5'- --cUUUUCCCcgCUUCCCCCccaCCCCg- -3' miRNA: 3'- gaaAGAAGGGa-GGAGGGGGa--GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149639 | 0.69 | 0.635864 |
Target: 5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3' miRNA: 3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149372 | 0.73 | 0.391005 |
Target: 5'- -cUUUUUCCCcuUCCUCCCCCaaacCCCCa- -3' miRNA: 3'- gaAAGAAGGG--AGGAGGGGGa---GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149161 | 0.71 | 0.516867 |
Target: 5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3' miRNA: 3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149109 | 0.67 | 0.725372 |
Target: 5'- cCUUUCgcuccggCCCaccgUCCcCCCCCcaucCCCCUCg -3' miRNA: 3'- -GAAAGaa-----GGG----AGGaGGGGGa---GGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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