miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 5' -59.1 NC_004812.1 + 38134 1.06 0.002171
Target:  5'- cUGGGGGUUUGGGGGAGGAAGGGGAAAa -3'
miRNA:   3'- -ACCCCCAAACCCCCUCCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24501 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24579 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 30660 0.66 0.774794
Target:  5'- cGcGGGaccGGGGccgcgcGAGGAAGGGGAGGg -3'
miRNA:   3'- aCcCCCaaaCCCC------CUCCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 37509 0.84 0.073196
Target:  5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3'
miRNA:   3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24130 0.84 0.073196
Target:  5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3'
miRNA:   3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 6078 0.82 0.097808
Target:  5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3'
miRNA:   3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 59003 0.82 0.100399
Target:  5'- cGGGGGaggGGGaaGGGGGAAGGGGAGAa -3'
miRNA:   3'- aCCCCCaaaCCC--CCUCCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 37868 0.81 0.108565
Target:  5'- gUGGGcaaGGg--GGGGGGGGggGGGGAAAg -3'
miRNA:   3'- -ACCC---CCaaaCCCCCUCCuuCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24462 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24345 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 40662 0.81 0.108565
Target:  5'- aGGGGGgcgcGGGGGAgGGGAGGGGGGc -3'
miRNA:   3'- aCCCCCaaa-CCCCCU-CCUUCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 30847 0.91 0.024929
Target:  5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24384 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 6130 0.87 0.042861
Target:  5'- aGGGGGa--GGGGGAGGggGGGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 40622 0.81 0.108565
Target:  5'- aGGGGGgcgcGGGGGAgGGGAGGGGGGc -3'
miRNA:   3'- aCCCCCaaa-CCCCCU-CCUUCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 24423 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 24540 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 99836 0.85 0.060754
Target:  5'- cGGGGaGgg-GGGGGAGGAGGGGGAc- -3'
miRNA:   3'- aCCCC-CaaaCCCCCUCCUUCCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 153452 0.82 0.095281
Target:  5'- cGGGGGgcgcggGGGGGGGcGGAGGGGAGc -3'
miRNA:   3'- aCCCCCaaa---CCCCCUC-CUUCCCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.