miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 1437 0.77 0.291138
Target:  5'- aGGgGCCGGGGccgcgagggccggGCACgGCGgcGACGCCGg -3'
miRNA:   3'- -CCaCGGCCCC-------------UGUG-UGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21168 0.77 0.291796
Target:  5'- cGUGCCGcGGGACgccgaggcGCGCGucGugGCCGa -3'
miRNA:   3'- cCACGGC-CCCUG--------UGUGCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 142400 0.77 0.291796
Target:  5'- --cGCCGGGGGCGgGgcCGAGGACgGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUgU--GCUUCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 115712 0.77 0.305199
Target:  5'- aGG-GCCauGGGGACACGgcAAGGCGCCGg -3'
miRNA:   3'- -CCaCGG--CCCCUGUGUgcUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 139956 0.76 0.31907
Target:  5'- cGGgggGCCGGGaGCGCGCGGcguggcGGACGUCGg -3'
miRNA:   3'- -CCa--CGGCCCcUGUGUGCU------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19670 0.76 0.32618
Target:  5'- --cGCCGGGGGC-CGCGggGACGagggcggcCCGg -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuuCUGC--------GGC- -5'
21547 3' -58.3 NC_004812.1 + 108763 0.76 0.32618
Target:  5'- --gGCUGGGGG-GCGCGggGGCGCCu -3'
miRNA:   3'- ccaCGGCCCCUgUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 35646 0.76 0.329057
Target:  5'- cGUGCCGcGGGcGCGCGCGggGgucgggggcucugugGCGCCGc -3'
miRNA:   3'- cCACGGC-CCC-UGUGUGCuuC---------------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 67979 0.76 0.333408
Target:  5'- -aUGCCGGcGGCGCACuGGGGCGCCGc -3'
miRNA:   3'- ccACGGCCcCUGUGUGcUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152409 0.76 0.333408
Target:  5'- uGGgGCCGGGcGC-CGCGggGGCGCCc -3'
miRNA:   3'- -CCaCGGCCCcUGuGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 121508 0.76 0.333408
Target:  5'- uGGgGCCGGGcGC-CGCGggGGCGCCc -3'
miRNA:   3'- -CCaCGGCCCcUGuGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 19486 0.76 0.333408
Target:  5'- --cGCUGGGGAUACuCGggGugGCUGc -3'
miRNA:   3'- ccaCGGCCCCUGUGuGCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31663 0.76 0.340752
Target:  5'- aGG-GCCGGGGACAgcCGCuGggGGCGCa- -3'
miRNA:   3'- -CCaCGGCCCCUGU--GUG-CuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 153163 0.75 0.348213
Target:  5'- cGGgggGCCacGGGGACcacgggggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCa--CGG--CCCCUG--------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 122262 0.75 0.348213
Target:  5'- cGGgggGCCacGGGGACcacgggggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCa--CGG--CCCCUG--------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 22906 0.75 0.355789
Target:  5'- aGGUGCgCGGGGGCGuggccgcgccccCGCGccuGGACGCCc -3'
miRNA:   3'- -CCACG-GCCCCUGU------------GUGCu--UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 149002 0.75 0.355789
Target:  5'- gGGUGUgCGGcGGGCcggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCACG-GCC-CCUG---UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 114682 0.75 0.355789
Target:  5'- cGGUGCCGGGcGCGCcCGggGcCGCgGg -3'
miRNA:   3'- -CCACGGCCCcUGUGuGCuuCuGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 121020 0.75 0.355789
Target:  5'- cGG-GCCGGGGGCGCuccccucGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUGugcuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 23494 0.75 0.355789
Target:  5'- gGGUGUgCGGcGGGCcggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCACG-GCC-CCUG---UGUGCuuCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.