miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 100928 0.74 0.471667
Target:  5'- gCCCACCgccaccgacAGC-CAcUGgACGGCCUGCUCc -3'
miRNA:   3'- -GGGUGG---------UCGuGU-ACgUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 82254 0.73 0.481095
Target:  5'- cCCCGCCGcccGCGCccGCGCc-CCUGCUCg -3'
miRNA:   3'- -GGGUGGU---CGUGuaCGUGcuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 25339 0.73 0.490614
Target:  5'- gCCACCAGCcgGCGguggGCgGCGACCacggGCUCg -3'
miRNA:   3'- gGGUGGUCG--UGUa---CG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 52475 0.73 0.490614
Target:  5'- gCCUACCGGCACGcgGCAUGGagucgCUGUUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUg----GACGAG- -5'
21551 5' -56.5 NC_004812.1 + 111067 0.73 0.50022
Target:  5'- aCCACCcGCGCAUGCGCG-CCUaCUg -3'
miRNA:   3'- gGGUGGuCGUGUACGUGCuGGAcGAg -5'
21551 5' -56.5 NC_004812.1 + 65779 0.73 0.50022
Target:  5'- -gCGCCGGCGCcgGCGCcACgUGCUCc -3'
miRNA:   3'- ggGUGGUCGUGuaCGUGcUGgACGAG- -5'
21551 5' -56.5 NC_004812.1 + 49766 0.73 0.518692
Target:  5'- aCCACCGGCGCgcccgugauguuGUGCACGgagaacacgcacuGCCUGC-Cg -3'
miRNA:   3'- gGGUGGUCGUG------------UACGUGC-------------UGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 61602 0.73 0.519672
Target:  5'- gCC-CCAGCACcUGCGCGAgCgaGCUCc -3'
miRNA:   3'- gGGuGGUCGUGuACGUGCU-GgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 15742 0.73 0.519672
Target:  5'- aCCCACCcccGCGCcuUGCGCG-CCUGCg- -3'
miRNA:   3'- -GGGUGGu--CGUGu-ACGUGCuGGACGag -5'
21551 5' -56.5 NC_004812.1 + 108409 0.72 0.539416
Target:  5'- uCUCaACCGGCACGUcgGCGGCCUGCa- -3'
miRNA:   3'- -GGG-UGGUCGUGUAcgUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 73927 0.72 0.539416
Target:  5'- gCCCAgCGGCGCcUGCuCGcCCUGCUg -3'
miRNA:   3'- -GGGUgGUCGUGuACGuGCuGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 18550 0.72 0.549384
Target:  5'- gCgGCCAGCGCG-GCGCGgGCCcGCUCc -3'
miRNA:   3'- gGgUGGUCGUGUaCGUGC-UGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 142255 0.72 0.549384
Target:  5'- gCCCGCgCGGCcgGCAaGCACGugCgGCUCc -3'
miRNA:   3'- -GGGUG-GUCG--UGUaCGUGCugGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 67095 0.72 0.549384
Target:  5'- aCCACCGGCGCgAUGCAguCGAagagGCUCg -3'
miRNA:   3'- gGGUGGUCGUG-UACGU--GCUgga-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 120667 0.72 0.549384
Target:  5'- gCCACCAGCgACGUGCaguucaaGCGGCCgcccgggagccgcgaGCUCg -3'
miRNA:   3'- gGGUGGUCG-UGUACG-------UGCUGGa--------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 70538 0.72 0.559408
Target:  5'- aCCGCCAGCGC--GCuGCGACCggUGCUUc -3'
miRNA:   3'- gGGUGGUCGUGuaCG-UGCUGG--ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 108851 0.72 0.559408
Target:  5'- gCCC-CCAGCGCcgcgGCGCuGACCUcGUUCg -3'
miRNA:   3'- -GGGuGGUCGUGua--CGUG-CUGGA-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 153866 0.72 0.569483
Target:  5'- gUCCGCUGGCcCGccgcGCGCGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGuGUa---CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 154282 0.72 0.569483
Target:  5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3'
miRNA:   3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28358 0.72 0.569483
Target:  5'- gUCCGCUGGCcCGccgcGCGCGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGuGUa---CGUGCUGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.