miRNA display CGI


Results 1 - 20 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 3' -58.7 NC_004812.1 + 106974 0.66 0.817151
Target:  5'- ------cCCCaggggcgCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGa------GGAGGGGGAGGGgag -5'
21559 3' -58.7 NC_004812.1 + 50056 0.66 0.808569
Target:  5'- -------gCCUCCUCCCUcagCUCCCCg- -3'
miRNA:   3'- gaaagaagGGAGGAGGGG---GAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 24327 0.66 0.806834
Target:  5'- aCUUUCUUaCCC-CC-CCCCCaccaccacacaCCCUCg -3'
miRNA:   3'- -GAAAGAA-GGGaGGaGGGGGag---------GGGAG- -5'
21559 3' -58.7 NC_004812.1 + 110088 0.66 0.799833
Target:  5'- -gUUCgcggCCCUgCUCCCCCagacgacCCCCg- -3'
miRNA:   3'- gaAAGaa--GGGAgGAGGGGGa------GGGGag -5'
21559 3' -58.7 NC_004812.1 + 84268 0.66 0.799833
Target:  5'- ------cCCCgCC-CCCCCUCCCCc- -3'
miRNA:   3'- gaaagaaGGGaGGaGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 120927 0.66 0.79095
Target:  5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3'
miRNA:   3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 151828 0.66 0.79095
Target:  5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3'
miRNA:   3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 132482 0.66 0.79095
Target:  5'- ---cCUUCCC-CCaCCCCCgCCCCcaUCg -3'
miRNA:   3'- gaaaGAAGGGaGGaGGGGGaGGGG--AG- -5'
21559 3' -58.7 NC_004812.1 + 112307 0.66 0.781929
Target:  5'- -----cUCCCUCUccgCCCCCgCCCCg- -3'
miRNA:   3'- gaaagaAGGGAGGa--GGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 63102 0.66 0.781929
Target:  5'- ---cCUUCuCCUUCUCUCCCggCCgCUCu -3'
miRNA:   3'- gaaaGAAG-GGAGGAGGGGGa-GGgGAG- -5'
21559 3' -58.7 NC_004812.1 + 122153 0.66 0.772777
Target:  5'- --gUCgUUCCCU--UCCCCCUCCCa-- -3'
miRNA:   3'- gaaAG-AAGGGAggAGGGGGAGGGgag -5'
21559 3' -58.7 NC_004812.1 + 52405 0.66 0.772777
Target:  5'- ---cCUUCCCcCCgcucgcucucgCUCCCUCCCCg- -3'
miRNA:   3'- gaaaGAAGGGaGGa----------GGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 7386 0.66 0.771855
Target:  5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3'
miRNA:   3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5'
21559 3' -58.7 NC_004812.1 + 38287 0.66 0.771855
Target:  5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3'
miRNA:   3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5'
21559 3' -58.7 NC_004812.1 + 38993 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 8092 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 112702 0.67 0.76257
Target:  5'- -cUUCUUCUacgccccggaccaCUUCUCCCCCUgcgCCgCCUCc -3'
miRNA:   3'- gaAAGAAGG-------------GAGGAGGGGGA---GG-GGAG- -5'
21559 3' -58.7 NC_004812.1 + 146092 0.67 0.754118
Target:  5'- aCUUUCccgCCCccgCCUCCggcuuCUCUCCCCUa -3'
miRNA:   3'- -GAAAGaa-GGGa--GGAGG-----GGGAGGGGAg -5'
21559 3' -58.7 NC_004812.1 + 146499 0.67 0.754118
Target:  5'- --cUUUUCCCuUCCUCaCCUCUCaCCCcCa -3'
miRNA:   3'- gaaAGAAGGG-AGGAG-GGGGAG-GGGaG- -5'
21559 3' -58.7 NC_004812.1 + 29047 0.67 0.744628
Target:  5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.