miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 74747 0.76 0.44719
Target:  5'- gGAGCgCGCGCAGcUGCU-CGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUcAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154333 0.76 0.44719
Target:  5'- --cGCCGCGCcgcucGUGCUGCGCGCGg- -3'
miRNA:   3'- guuCGGCGCGuu---CAUGAUGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 2664 0.76 0.456547
Target:  5'- gAGGCgCGCGCAGGcgGCcucgACGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa-UGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100904 0.76 0.456547
Target:  5'- --cGCCgaGCGCGGGUGCagGCGCGCGCc -3'
miRNA:   3'- guuCGG--CGCGUUCAUGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 128172 0.76 0.456547
Target:  5'- gAGGCgCGCGCAGGcgGCcucgACGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa-UGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 89057 0.76 0.466009
Target:  5'- -uGGCgGCgGCGAGagcUGCUGCACGCGCg -3'
miRNA:   3'- guUCGgCG-CGUUC---AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 29523 0.75 0.491072
Target:  5'- gGAGCCGUGCGGGggggacccgggcgGCU-CGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUCa------------UGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 155031 0.75 0.491072
Target:  5'- gGAGCCGUGCGGGggggacccgggcgGCU-CGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUCa------------UGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 141785 0.75 0.524749
Target:  5'- -cGGCCGCGCGGGgggGCggGC-CGCGCg -3'
miRNA:   3'- guUCGGCGCGUUCa--UGa-UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 59665 0.75 0.544967
Target:  5'- aCGGGCCgGCGCGGGcgccgcguUGCcGCGCGCGCg -3'
miRNA:   3'- -GUUCGG-CGCGUUC--------AUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 15324 0.74 0.584012
Target:  5'- gCAGGCCGCGCGAGggggaagugACGCaGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUCauga-----UGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 110633 0.74 0.586085
Target:  5'- --cGCCGgaCGCGGGggaGCUGCGCGUGCUg -3'
miRNA:   3'- guuCGGC--GCGUUCa--UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 132825 0.74 0.596469
Target:  5'- gGAGCCGCGCAcgcgucGGaugGCcgaGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGU------UCa--UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 16498 0.74 0.596469
Target:  5'- ---uUCGCGUccGUGCUGCGCGCGCc -3'
miRNA:   3'- guucGGCGCGuuCAUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27356 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152864 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26275 0.73 0.617311
Target:  5'- -cGGCCGCGCGGGUGCccCGCG-GCg -3'
miRNA:   3'- guUCGGCGCGUUCAUGauGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 70881 0.73 0.627753
Target:  5'- aAGGCCGCGUAGGc---GCACGUGCg -3'
miRNA:   3'- gUUCGGCGCGUUCaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 143447 0.73 0.627753
Target:  5'- gGAGCUGCGCGuGUugUcucGCGCGuCGCUg -3'
miRNA:   3'- gUUCGGCGCGUuCAugA---UGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 154287 0.73 0.638199
Target:  5'- --cGCUGCGCGccuuCUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucauGAUGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.