miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 20821 1.06 0.002368
Target:  5'- cAGCCGGAACAGUUCCCACACCGGGGUc -3'
miRNA:   3'- -UCGGCCUUGUCAAGGGUGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 98679 0.79 0.164298
Target:  5'- gAGCCGGGGCGGgcgcggUCgaaccgCCGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCUUGUCa-----AG------GGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 13323 0.78 0.194712
Target:  5'- cGCCGGGggucgggggugcgGCGGUcccUUCCGCGCCGGGGg -3'
miRNA:   3'- uCGGCCU-------------UGUCA---AGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 84689 0.77 0.242252
Target:  5'- cGCuCGGGGCcaggCCCGCACCGGGGg -3'
miRNA:   3'- uCG-GCCUUGucaaGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 37654 0.76 0.266042
Target:  5'- aGGCCGucGCAG-UCCCACACCagcGGGGg -3'
miRNA:   3'- -UCGGCcuUGUCaAGGGUGUGG---CCCCa -5'
21585 5' -59.1 NC_004812.1 + 13362 0.76 0.266042
Target:  5'- nGGUCGGGggugcgGCGGUcccUUCCGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCU------UGUCA---AGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 105773 0.75 0.312165
Target:  5'- cGGCgGGGauccACAGUagcUCCCGuCGCCGGGGg -3'
miRNA:   3'- -UCGgCCU----UGUCA---AGGGU-GUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 101178 0.74 0.339641
Target:  5'- cGGCgGGGACGGUcguggacaaccgCgCCGCGCCGGGGg -3'
miRNA:   3'- -UCGgCCUUGUCAa-----------G-GGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 154696 0.74 0.341135
Target:  5'- cGGCCGGAGCcucggCCCAUAUaCGGGGUg -3'
miRNA:   3'- -UCGGCCUUGucaa-GGGUGUG-GCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 123795 0.74 0.341135
Target:  5'- cGGCCGGAGCcucggCCCAUAUaCGGGGUg -3'
miRNA:   3'- -UCGGCCUUGucaa-GGGUGUG-GCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 58284 0.74 0.345645
Target:  5'- gGGCCGGAggagguuGCAGcUcgcaaacaucgucgUCCaCGCGCCGGGGUg -3'
miRNA:   3'- -UCGGCCU-------UGUC-A--------------AGG-GUGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 519 0.73 0.380008
Target:  5'- cGGCCGGGGCGGgcCCgCGCGCCcGGGc -3'
miRNA:   3'- -UCGGCCUUGUCaaGG-GUGUGGcCCCa -5'
21585 5' -59.1 NC_004812.1 + 31420 0.73 0.380008
Target:  5'- cGGCCGGGGCGGgcCCgCGCGCCcGGGc -3'
miRNA:   3'- -UCGGCCUUGUCaaGG-GUGUGGcCCCa -5'
21585 5' -59.1 NC_004812.1 + 73638 0.73 0.380008
Target:  5'- uGCUGGAGCAGUUCgagCACACCGuccGGGa -3'
miRNA:   3'- uCGGCCUUGUCAAGg--GUGUGGC---CCCa -5'
21585 5' -59.1 NC_004812.1 + 76946 0.73 0.388131
Target:  5'- gGGCgGGGGCGaugguguuuuucGUUCCCGCcggGCCGGGGc -3'
miRNA:   3'- -UCGgCCUUGU------------CAAGGGUG---UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 142375 0.73 0.388131
Target:  5'- -cCCGGggUGGgaCCuCGCACCGGGGa -3'
miRNA:   3'- ucGGCCuuGUCaaGG-GUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 118336 0.73 0.396366
Target:  5'- cGCCGGAGCAGUUUgCGCgGCCGGa-- -3'
miRNA:   3'- uCGGCCUUGUCAAGgGUG-UGGCCcca -5'
21585 5' -59.1 NC_004812.1 + 13576 0.73 0.413171
Target:  5'- cGCCGGAGCgAGUUUCC---CCGGGGg -3'
miRNA:   3'- uCGGCCUUG-UCAAGGGuguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 27764 0.73 0.413171
Target:  5'- cGGCCcgcaGGGGCGGgcggCCCAgccCGCCGGGGg -3'
miRNA:   3'- -UCGG----CCUUGUCaa--GGGU---GUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 144429 0.72 0.421736
Target:  5'- cGGCuCGGA--AGUUCCCGCGCCGuucuGGGg -3'
miRNA:   3'- -UCG-GCCUugUCAAGGGUGUGGC----CCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.