miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 30113 0.7 0.551436
Target:  5'- gGGCugCGGGGCGcacgUCCCGCAgcccCCGGGGUg -3'
miRNA:   3'- -UCG--GCCUUGUca--AGGGUGU----GGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 98720 0.72 0.448059
Target:  5'- cGGCgCGGggUcGUUCUCGCGCgGGGGc -3'
miRNA:   3'- -UCG-GCCuuGuCAAGGGUGUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 98071 0.72 0.457035
Target:  5'- cGGCCGGAGcCGGgcCCCGggcUAUCGGGGg -3'
miRNA:   3'- -UCGGCCUU-GUCaaGGGU---GUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 35291 0.71 0.48452
Target:  5'- gAGCCGGGuggGCAGcaCCCGCGCgaucaccgCGGGGa -3'
miRNA:   3'- -UCGGCCU---UGUCaaGGGUGUG--------GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 67409 0.71 0.503276
Target:  5'- gAGCCGGGGCcccGGcUCCCAgACggCGGGGg -3'
miRNA:   3'- -UCGGCCUUG---UCaAGGGUgUG--GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 19757 0.71 0.503276
Target:  5'- cAGcCCGGuGCGGgggUCCCaggcgacgcGCGCCGGGGc -3'
miRNA:   3'- -UC-GGCCuUGUCa--AGGG---------UGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 101970 0.71 0.522341
Target:  5'- gGGCCGcGGACGcccgccgCCCGCGCgGGGGg -3'
miRNA:   3'- -UCGGC-CUUGUcaa----GGGUGUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 100357 0.7 0.531011
Target:  5'- cGCgGGGccACGGUUCCgGCgcccgccGCCGGGGg -3'
miRNA:   3'- uCGgCCU--UGUCAAGGgUG-------UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 6294 0.7 0.531978
Target:  5'- cGGCCagggGGAGCGGcgCCCccggGCACgCGGGGg -3'
miRNA:   3'- -UCGG----CCUUGUCaaGGG----UGUG-GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 155930 0.72 0.448059
Target:  5'- aGGCCGGGccGCGGga---GCGCCGGGGUg -3'
miRNA:   3'- -UCGGCCU--UGUCaagggUGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 8241 0.72 0.430408
Target:  5'- cGGCCGGGcCGGggguccgCCCccggggGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCUuGUCaa-----GGG------UGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 144429 0.72 0.421736
Target:  5'- cGGCuCGGA--AGUUCCCGCGCCGuucuGGGg -3'
miRNA:   3'- -UCG-GCCUugUCAAGGGUGUGGC----CCCa -5'
21585 5' -59.1 NC_004812.1 + 98679 0.79 0.164298
Target:  5'- gAGCCGGGGCGGgcgcggUCgaaccgCCGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCUUGUCa-----AG------GGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 84689 0.77 0.242252
Target:  5'- cGCuCGGGGCcaggCCCGCACCGGGGg -3'
miRNA:   3'- uCG-GCCUUGucaaGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 37654 0.76 0.266042
Target:  5'- aGGCCGucGCAG-UCCCACACCagcGGGGg -3'
miRNA:   3'- -UCGGCcuUGUCaAGGGUGUGG---CCCCa -5'
21585 5' -59.1 NC_004812.1 + 123795 0.74 0.341135
Target:  5'- cGGCCGGAGCcucggCCCAUAUaCGGGGUg -3'
miRNA:   3'- -UCGGCCUUGucaa-GGGUGUG-GCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 58284 0.74 0.345645
Target:  5'- gGGCCGGAggagguuGCAGcUcgcaaacaucgucgUCCaCGCGCCGGGGUg -3'
miRNA:   3'- -UCGGCCU-------UGUC-A--------------AGG-GUGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 519 0.73 0.380008
Target:  5'- cGGCCGGGGCGGgcCCgCGCGCCcGGGc -3'
miRNA:   3'- -UCGGCCUUGUCaaGG-GUGUGGcCCCa -5'
21585 5' -59.1 NC_004812.1 + 142375 0.73 0.388131
Target:  5'- -cCCGGggUGGgaCCuCGCACCGGGGa -3'
miRNA:   3'- ucGGCCuuGUCaaGG-GUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 27764 0.73 0.413171
Target:  5'- cGGCCcgcaGGGGCGGgcggCCCAgccCGCCGGGGg -3'
miRNA:   3'- -UCGG----CCUUGUCaa--GGGU---GUGGCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.