miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 116 0.68 0.679813
Target:  5'- gGGCCGGGAgcccgccCGGgagCCCGC-CCGGGa- -3'
miRNA:   3'- -UCGGCCUU-------GUCaa-GGGUGuGGCCCca -5'
21585 5' -59.1 NC_004812.1 + 519 0.73 0.380008
Target:  5'- cGGCCGGGGCGGgcCCgCGCGCCcGGGc -3'
miRNA:   3'- -UCGGCCUUGUCaaGG-GUGUGGcCCCa -5'
21585 5' -59.1 NC_004812.1 + 819 0.7 0.581006
Target:  5'- cGGCCGGGaaGCGGUgUCCgACGCCcGGaGGg -3'
miRNA:   3'- -UCGGCCU--UGUCA-AGGgUGUGG-CC-CCa -5'
21585 5' -59.1 NC_004812.1 + 1670 0.68 0.690703
Target:  5'- uGGCCGcGGcgccGCGGcccgCCCGCGgCGGGGg -3'
miRNA:   3'- -UCGGC-CU----UGUCaa--GGGUGUgGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 2110 0.67 0.739327
Target:  5'- gGGCCGcGcuccCAGUcccagUCCCAguCCGGGGa -3'
miRNA:   3'- -UCGGC-Cuu--GUCA-----AGGGUguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 4633 0.67 0.748817
Target:  5'- gGGCgGGGggGCGGgacgCCCGCGC-GGGGa -3'
miRNA:   3'- -UCGgCCU--UGUCaa--GGGUGUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 5331 0.69 0.640909
Target:  5'- cGCCGGGGCG----CCGC-CCGGGGUc -3'
miRNA:   3'- uCGGCCUUGUcaagGGUGuGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 5620 0.66 0.803405
Target:  5'- gGGCCGGAgGCGGcUCgggggCCGgGCCcGGGGUc -3'
miRNA:   3'- -UCGGCCU-UGUCaAG-----GGUgUGG-CCCCA- -5'
21585 5' -59.1 NC_004812.1 + 5688 0.68 0.700555
Target:  5'- gGGCCGGG--GGUcUCCCAgggcCACgGGGGg -3'
miRNA:   3'- -UCGGCCUugUCA-AGGGU----GUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 5930 0.67 0.729746
Target:  5'- -cCCGGGGCAGgccCCCGgGCacaGGGGg -3'
miRNA:   3'- ucGGCCUUGUCaa-GGGUgUGg--CCCCa -5'
21585 5' -59.1 NC_004812.1 + 6294 0.7 0.531978
Target:  5'- cGGCCagggGGAGCGGcgCCCccggGCACgCGGGGg -3'
miRNA:   3'- -UCGG----CCUUGUCaaGGG----UGUG-GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 6454 0.68 0.660902
Target:  5'- cGCCGGGACGa---CCGCGggcCCGGGGa -3'
miRNA:   3'- uCGGCCUUGUcaagGGUGU---GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 6912 0.66 0.803405
Target:  5'- -cUCGGGGCGcgcuGcgCCCGCgggGCCGGGGUg -3'
miRNA:   3'- ucGGCCUUGU----CaaGGGUG---UGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 7994 0.69 0.590941
Target:  5'- cGCCGGu-CAGgggggcgcUCCCGCGaccCCGGGGg -3'
miRNA:   3'- uCGGCCuuGUCa-------AGGGUGU---GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 8241 0.72 0.430408
Target:  5'- cGGCCGGGcCGGggguccgCCCccggggGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCUuGUCaa-----GGG------UGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 8347 0.67 0.728784
Target:  5'- uGCCGGGcGCGGccgcCCCACcgcgucggcggccGCCGGGGc -3'
miRNA:   3'- uCGGCCU-UGUCaa--GGGUG-------------UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 8837 0.67 0.739327
Target:  5'- gAGCuacuaCGGggUuGUUCCCGgGCgGGGGg -3'
miRNA:   3'- -UCG-----GCCuuGuCAAGGGUgUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 10230 0.69 0.640909
Target:  5'- uGuCUGGAAaAGUgggCCCGCGgCGGGGUg -3'
miRNA:   3'- uC-GGCCUUgUCAa--GGGUGUgGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 10471 0.66 0.766573
Target:  5'- uGCCGGGugGGga-CCGCGggggggagucggcUCGGGGUa -3'
miRNA:   3'- uCGGCCUugUCaagGGUGU-------------GGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 12135 0.72 0.457035
Target:  5'- cGuuGGu-CAcGUUCCCGCGCUGGGGc -3'
miRNA:   3'- uCggCCuuGU-CAAGGGUGUGGCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.