miRNA display CGI


Results 21 - 40 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 143108 0.74 0.327702
Target:  5'- cGCCGUGgGCCCCGCGCCUGGcGcUgACg -3'
miRNA:   3'- -CGGCACaUGGGGUGCGGGUC-CaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 153086 0.74 0.327702
Target:  5'- cGCCGcg-GCCCCGCcCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGcGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 66600 0.73 0.349793
Target:  5'- cGCCGgcccgcgGgccGCUCCACGCCCAGG-CCGu -3'
miRNA:   3'- -CGGCa------Ca--UGGGGUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 60569 0.73 0.357388
Target:  5'- gGCCGgcggagcaUGcGCaCCCGCGUCCAGGUCC-Cg -3'
miRNA:   3'- -CGGC--------ACaUG-GGGUGCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 49072 0.73 0.365099
Target:  5'- cGCCGacGUGCUCguCGCCCAGG-CCAUc -3'
miRNA:   3'- -CGGCa-CAUGGGguGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 31421 0.73 0.365099
Target:  5'- gGCCGgGgcggGCCCgCGCGCCCGGGcCCu- -3'
miRNA:   3'- -CGGCaCa---UGGG-GUGCGGGUCCaGGug -5'
21602 3' -60.2 NC_004812.1 + 520 0.73 0.365099
Target:  5'- gGCCGgGgcggGCCCgCGCGCCCGGGcCCu- -3'
miRNA:   3'- -CGGCaCa---UGGG-GUGCGGGUCCaGGug -5'
21602 3' -60.2 NC_004812.1 + 27377 0.73 0.372923
Target:  5'- gGCCGaUGUACC--GC-CCCAGGUCCAUg -3'
miRNA:   3'- -CGGC-ACAUGGggUGcGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 133906 0.72 0.380861
Target:  5'- gGCCGUGguaACCCCGgGCgggggggacgCgGGGUCCGCu -3'
miRNA:   3'- -CGGCACa--UGGGGUgCG----------GgUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 51310 0.72 0.388911
Target:  5'- cCCGUacGggcaGCCCUACGCCCAGG-CCAg -3'
miRNA:   3'- cGGCA--Ca---UGGGGUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 34247 0.72 0.405341
Target:  5'- cGCCGc--GCCCCGCGCCCcGGcccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 21948 0.72 0.405341
Target:  5'- gGCCGUGguacACgCCACGCCguGGUgcUCGCg -3'
miRNA:   3'- -CGGCACa---UGgGGUGCGGguCCA--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 3346 0.72 0.405341
Target:  5'- cGCCGc--GCCCCGCGCCCcGGcccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 133106 0.72 0.413719
Target:  5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3'
miRNA:   3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 49002 0.72 0.413719
Target:  5'- -aCGUGaACCCCgGCGgCCGGGcCCACg -3'
miRNA:   3'- cgGCACaUGGGG-UGCgGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 22696 0.72 0.413719
Target:  5'- cCCGcGUcCCCCcCGCCCGGGguuaCCACg -3'
miRNA:   3'- cGGCaCAuGGGGuGCGGGUCCa---GGUG- -5'
21602 3' -60.2 NC_004812.1 + 134591 0.72 0.413719
Target:  5'- cGUCGgggaGUACgCCAUGCCCGGGUUCuCg -3'
miRNA:   3'- -CGGCa---CAUGgGGUGCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 7598 0.72 0.413719
Target:  5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3'
miRNA:   3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 50115 0.72 0.421349
Target:  5'- cGCCGcGga-CCCGCGCCCcagccacGGGUUCGCg -3'
miRNA:   3'- -CGGCaCaugGGGUGCGGG-------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 59196 0.71 0.447383
Target:  5'- cGCCGUcgACCCaccaguaCGCGCCCgAGGcCCGCg -3'
miRNA:   3'- -CGGCAcaUGGG-------GUGCGGG-UCCaGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.