miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 36556 1.11 0.000927
Target:  5'- gGCCGUGUACCCCACGCCCAGGUCCACg -3'
miRNA:   3'- -CGGCACAUGGGGUGCGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 45339 0.81 0.108665
Target:  5'- cGCCGUgucGUugCCCGCGCCCAcGGgCCGCa -3'
miRNA:   3'- -CGGCA---CAugGGGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 99699 0.8 0.136349
Target:  5'- cGCCGUGcggcgGCgCCUGCGCCCAGGgcuggCCGCa -3'
miRNA:   3'- -CGGCACa----UG-GGGUGCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 49384 0.78 0.166256
Target:  5'- cGCCGcccUGUGCCUCgACGCCCAGGcggcCCGCg -3'
miRNA:   3'- -CGGC---ACAUGGGG-UGCGGGUCCa---GGUG- -5'
21602 3' -60.2 NC_004812.1 + 40904 0.78 0.183322
Target:  5'- uGCCGUGU-CCCCAUGCCCuGGGcUCGCc -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGG-UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 114679 0.77 0.192423
Target:  5'- gGCCG-GUGCCgggCGCGCCCGGGgCCGCg -3'
miRNA:   3'- -CGGCaCAUGGg--GUGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 119407 0.76 0.244042
Target:  5'- cGUCGUGgacgGCCCCGCGCUgcugacgcugCAGGUCCucGCg -3'
miRNA:   3'- -CGGCACa---UGGGGUGCGG----------GUCCAGG--UG- -5'
21602 3' -60.2 NC_004812.1 + 140385 0.75 0.255655
Target:  5'- gGCCGgccgGCUCCGCcuccggcgcgcgGCCCGGGUCCGCc -3'
miRNA:   3'- -CGGCaca-UGGGGUG------------CGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 61989 0.75 0.255655
Target:  5'- cCCGUcu-CUCCGCGCCCAGGggCCGCg -3'
miRNA:   3'- cGGCAcauGGGGUGCGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 85379 0.75 0.267719
Target:  5'- cGCCGagcUGUGCUUCggGCGCCCGGGggCCGCg -3'
miRNA:   3'- -CGGC---ACAUGGGG--UGCGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 120192 0.75 0.267719
Target:  5'- cGCCGUGU-CCCUgcugcgcgGCGCCCGGcGUCCu- -3'
miRNA:   3'- -CGGCACAuGGGG--------UGCGGGUC-CAGGug -5'
21602 3' -60.2 NC_004812.1 + 151093 0.75 0.267719
Target:  5'- cGCCGUGU-CCCUgcugcgcgGCGCCCGGcGUCCu- -3'
miRNA:   3'- -CGGCACAuGGGG--------UGCGGGUC-CAGGug -5'
21602 3' -60.2 NC_004812.1 + 80869 0.75 0.273921
Target:  5'- uGCUGUaGUcuCCCCagGCGCCCAGGUCgCGCc -3'
miRNA:   3'- -CGGCA-CAu-GGGG--UGCGGGUCCAG-GUG- -5'
21602 3' -60.2 NC_004812.1 + 75332 0.75 0.280237
Target:  5'- gGCCGUGUccuugaCCgGCGCCU-GGUCCACg -3'
miRNA:   3'- -CGGCACAug----GGgUGCGGGuCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 91110 0.74 0.293217
Target:  5'- cGCCGU---CCCCuCGCCCccguGGUCCGCg -3'
miRNA:   3'- -CGGCAcauGGGGuGCGGGu---CCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 109405 0.74 0.293217
Target:  5'- aGUCGgg-GCgCCGCGCCCccAGGUCCACc -3'
miRNA:   3'- -CGGCacaUGgGGUGCGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25624 0.74 0.30666
Target:  5'- cGCCGUGU-CCCCGCGCCagcuGGcCCuGCu -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGgu--CCaGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 151132 0.74 0.30666
Target:  5'- cGCCGUGU-CCCCGCGCCagcuGGcCCuGCu -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGgu--CCaGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 12966 0.74 0.30666
Target:  5'- aGUCGaacgGcGCUCCGCGCCCGGGgCCGCg -3'
miRNA:   3'- -CGGCa---CaUGGGGUGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 153086 0.74 0.327702
Target:  5'- cGCCGcg-GCCCCGCcCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGcGGGUCCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.