miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 151 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 461 0.68 0.648977
Target:  5'- cCCGcGcgUCCCGCGCCCcGcGUCCGCg -3'
miRNA:   3'- cGGCaCauGGGGUGCGGGuC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 520 0.73 0.365099
Target:  5'- gGCCGgGgcggGCCCgCGCGCCCGGGcCCu- -3'
miRNA:   3'- -CGGCaCa---UGGG-GUGCGGGUCCaGGug -5'
21602 3' -60.2 NC_004812.1 + 639 0.66 0.764562
Target:  5'- aGCCGggaucgaGUGCgCCCaccaacgccGCGCCCGGG-CgGCg -3'
miRNA:   3'- -CGGCa------CAUG-GGG---------UGCGGGUCCaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 774 0.67 0.668736
Target:  5'- cGCCGcGgGCCCCuucuGgGCCuCGGGUUCGCu -3'
miRNA:   3'- -CGGCaCaUGGGG----UgCGG-GUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 820 0.66 0.764562
Target:  5'- gGCCGggaagcgGUGUCCgACGCCCggAGGgccCCGCg -3'
miRNA:   3'- -CGGCa------CAUGGGgUGCGGG--UCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 1088 0.66 0.717505
Target:  5'- gGCCGcgGUcuccuccuGCCCgGCgGCCCGGGUCg-- -3'
miRNA:   3'- -CGGCa-CA--------UGGGgUG-CGGGUCCAGgug -5'
21602 3' -60.2 NC_004812.1 + 1198 0.66 0.755337
Target:  5'- cGCCGcc-GCCaCCACGCCC-GGcCCGg -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGuCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 1225 0.69 0.589631
Target:  5'- cGCCGcGgggGCUCCucccCGCCCGGGcggcgCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGu---GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 1774 0.69 0.550552
Target:  5'- aGCCGc--GCCCCGCGCCgaCGGGagCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGG--GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 1864 0.68 0.619264
Target:  5'- cGCCGgggGCCUCcauuggcccggGCGCCCGGGccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGG-----------UGCGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 2890 0.68 0.639076
Target:  5'- cGCCGUGgACUUCAucuggguggacCGCCCGGGggagcCCGCc -3'
miRNA:   3'- -CGGCACaUGGGGU-----------GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 3346 0.72 0.405341
Target:  5'- cGCCGc--GCCCCGCGCCCcGGcccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 3529 0.68 0.597515
Target:  5'- cGCCcaccagaCCCAgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGcacaug-GGGUgCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3648 0.66 0.755337
Target:  5'- aGCCcag-GCCCgGCGCCCAaGUCC-Cg -3'
miRNA:   3'- -CGGcacaUGGGgUGCGGGUcCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 3715 0.66 0.727087
Target:  5'- cGCCcaaGUcccGCCCgGCGCUCAGGcCCAg -3'
miRNA:   3'- -CGGca-CA---UGGGgUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 3822 0.69 0.560258
Target:  5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3'
miRNA:   3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 3874 0.66 0.746011
Target:  5'- cGCCGcg-GCCCgcaaGCGCCCGGccUCCGCc -3'
miRNA:   3'- -CGGCacaUGGGg---UGCGGGUCc-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 4194 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 4698 0.66 0.717505
Target:  5'- cGCCccaGaGCCCCGggcggcuguCGCCCAGG-CCGCc -3'
miRNA:   3'- -CGGca-CaUGGGGU---------GCGGGUCCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.