Results 1 - 20 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 133106 | 0.72 | 0.413719 |
Target: 5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3' miRNA: 3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 153086 | 0.74 | 0.327702 |
Target: 5'- cGCCGcg-GCCCCGCcCCCGGGgCCGCc -3' miRNA: 3'- -CGGCacaUGGGGUGcGGGUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 66600 | 0.73 | 0.349793 |
Target: 5'- cGCCGgcccgcgGgccGCUCCACGCCCAGG-CCGu -3' miRNA: 3'- -CGGCa------Ca--UGGGGUGCGGGUCCaGGUg -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 520 | 0.73 | 0.365099 |
Target: 5'- gGCCGgGgcggGCCCgCGCGCCCGGGcCCu- -3' miRNA: 3'- -CGGCaCa---UGGG-GUGCGGGUCCaGGug -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 27377 | 0.73 | 0.372923 |
Target: 5'- gGCCGaUGUACC--GC-CCCAGGUCCAUg -3' miRNA: 3'- -CGGC-ACAUGGggUGcGGGUCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 133906 | 0.72 | 0.380861 |
Target: 5'- gGCCGUGguaACCCCGgGCgggggggacgCgGGGUCCGCu -3' miRNA: 3'- -CGGCACa--UGGGGUgCG----------GgUCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 51310 | 0.72 | 0.388911 |
Target: 5'- cCCGUacGggcaGCCCUACGCCCAGG-CCAg -3' miRNA: 3'- cGGCA--Ca---UGGGGUGCGGGUCCaGGUg -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 3346 | 0.72 | 0.405341 |
Target: 5'- cGCCGc--GCCCCGCGCCCcGGcccCCGCc -3' miRNA: 3'- -CGGCacaUGGGGUGCGGGuCCa--GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 49002 | 0.72 | 0.413719 |
Target: 5'- -aCGUGaACCCCgGCGgCCGGGcCCACg -3' miRNA: 3'- cgGCACaUGGGG-UGCgGGUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 143108 | 0.74 | 0.327702 |
Target: 5'- cGCCGUGgGCCCCGCGCCUGGcGcUgACg -3' miRNA: 3'- -CGGCACaUGGGGUGCGGGUC-CaGgUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 151132 | 0.74 | 0.30666 |
Target: 5'- cGCCGUGU-CCCCGCGCCagcuGGcCCuGCu -3' miRNA: 3'- -CGGCACAuGGGGUGCGGgu--CCaGG-UG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 12966 | 0.74 | 0.30666 |
Target: 5'- aGUCGaacgGcGCUCCGCGCCCGGGgCCGCg -3' miRNA: 3'- -CGGCa---CaUGGGGUGCGGGUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 49384 | 0.78 | 0.166256 |
Target: 5'- cGCCGcccUGUGCCUCgACGCCCAGGcggcCCGCg -3' miRNA: 3'- -CGGC---ACAUGGGG-UGCGGGUCCa---GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 114679 | 0.77 | 0.192423 |
Target: 5'- gGCCG-GUGCCgggCGCGCCCGGGgCCGCg -3' miRNA: 3'- -CGGCaCAUGGg--GUGCGGGUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 61989 | 0.75 | 0.255655 |
Target: 5'- cCCGUcu-CUCCGCGCCCAGGggCCGCg -3' miRNA: 3'- cGGCAcauGGGGUGCGGGUCCa-GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 120192 | 0.75 | 0.267719 |
Target: 5'- cGCCGUGU-CCCUgcugcgcgGCGCCCGGcGUCCu- -3' miRNA: 3'- -CGGCACAuGGGG--------UGCGGGUC-CAGGug -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 85379 | 0.75 | 0.267719 |
Target: 5'- cGCCGagcUGUGCUUCggGCGCCCGGGggCCGCg -3' miRNA: 3'- -CGGC---ACAUGGGG--UGCGGGUCCa-GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 80869 | 0.75 | 0.273921 |
Target: 5'- uGCUGUaGUcuCCCCagGCGCCCAGGUCgCGCc -3' miRNA: 3'- -CGGCA-CAu-GGGG--UGCGGGUCCAG-GUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 75332 | 0.75 | 0.280237 |
Target: 5'- gGCCGUGUccuugaCCgGCGCCU-GGUCCACg -3' miRNA: 3'- -CGGCACAug----GGgUGCGGGuCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 91110 | 0.74 | 0.293217 |
Target: 5'- cGCCGU---CCCCuCGCCCccguGGUCCGCg -3' miRNA: 3'- -CGGCAcauGGGGuGCGGGu---CCAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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