miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 50214 0.65 0.770044
Target:  5'- gGCCGUGaggccgagcggcgACCCCGaaaCCCgggcgaaggugAGGUCCACc -3'
miRNA:   3'- -CGGCACa------------UGGGGUgc-GGG-----------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 24490 0.65 0.770044
Target:  5'- gGCCGcuccuggacggggGgcCCCCGCGCCgCGGGggCUGCg -3'
miRNA:   3'- -CGGCa------------CauGGGGUGCGG-GUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 42095 0.66 0.717505
Target:  5'- cGCCG---ACCCgaCGCGcCCCGGaGUCCGCc -3'
miRNA:   3'- -CGGCacaUGGG--GUGC-GGGUC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 65263 0.66 0.746011
Target:  5'- -gCGUcUGCCCCAC-CUCAcGGUCUACu -3'
miRNA:   3'- cgGCAcAUGGGGUGcGGGU-CCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 30806 0.66 0.743195
Target:  5'- gGCCGaggGCCCCACgggggggcagggcgGCgCCAGGcgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUG--------------CG-GGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 60636 0.66 0.745073
Target:  5'- cGCCGacgGUcACCUCGucgaugcCGCCCAGGUgCAg -3'
miRNA:   3'- -CGGCa--CA-UGGGGU-------GCGGGUCCAgGUg -5'
21602 3' -60.2 NC_004812.1 + 28448 0.66 0.727087
Target:  5'- cGCCGacgcaGcGCCgCGCGaCCC-GGUCCGCg -3'
miRNA:   3'- -CGGCa----CaUGGgGUGC-GGGuCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125121 0.66 0.736592
Target:  5'- uCCGcGcUACCggagCCGCGCCCGcGGcUCCACg -3'
miRNA:   3'- cGGCaC-AUGG----GGUGCGGGU-CC-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 121259 0.66 0.727087
Target:  5'- cGCCGggGUACUCgggcggggacaCGCgGCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCa-CAUGGG-----------GUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 5743 0.66 0.727087
Target:  5'- cGCCGg--GCgCC--GCCCAGGcCCACa -3'
miRNA:   3'- -CGGCacaUGgGGugCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 18214 0.66 0.736592
Target:  5'- cCCcaGUACUCCGCGUCgAGGcgCCGCu -3'
miRNA:   3'- cGGcaCAUGGGGUGCGGgUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 97231 0.66 0.727087
Target:  5'- -gCGUGggGCCUCGCGCCCugcGGGgCCGg -3'
miRNA:   3'- cgGCACa-UGGGGUGCGGG---UCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 155166 0.66 0.736592
Target:  5'- cGCCGUGcccgGCCCuCGCgGCCCcGGccccuccCCGCg -3'
miRNA:   3'- -CGGCACa---UGGG-GUG-CGGGuCCa------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 18418 0.66 0.736592
Target:  5'- uCCGUGUcGCUguuccagaaCCACGCCCccgucuGGcUCCACa -3'
miRNA:   3'- cGGCACA-UGG---------GGUGCGGGu-----CC-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 94257 0.66 0.736592
Target:  5'- cGCCG---ACCCaCGCGCCgCGGGcgcgcgCCGCg -3'
miRNA:   3'- -CGGCacaUGGG-GUGCGG-GUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 130206 0.66 0.717505
Target:  5'- cGCCccaGaGCCCCGggcggcuguCGCCCAGG-CCGCc -3'
miRNA:   3'- -CGGca-CaUGGGGU---------GCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 1088 0.66 0.717505
Target:  5'- gGCCGcgGUcuccuccuGCCCgGCgGCCCGGGUCg-- -3'
miRNA:   3'- -CGGCa-CA--------UGGGgUG-CGGGUCCAGgug -5'
21602 3' -60.2 NC_004812.1 + 153189 0.66 0.736592
Target:  5'- cGCCGcGUGCCgCCgGgGCCCAG--CCACa -3'
miRNA:   3'- -CGGCaCAUGG-GG-UgCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 99871 0.66 0.736592
Target:  5'- uGCCGcagGgcCCCCACGgCCGcGcCCACg -3'
miRNA:   3'- -CGGCa--CauGGGGUGCgGGUcCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3715 0.66 0.727087
Target:  5'- cGCCcaaGUcccGCCCgGCGCUCAGGcCCAg -3'
miRNA:   3'- -CGGca-CA---UGGGgUGCGGGUCCaGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.