miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 156428 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 156182 0.67 0.950781
Target:  5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155950 0.66 0.976969
Target:  5'- cGGGgUGCGaaccugGGGCG-GAAGg--ACGCa -3'
miRNA:   3'- -CCCgACGCa-----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155721 0.72 0.774927
Target:  5'- aGGGggGUG-GGGgGUGggGggCGCGCg -3'
miRNA:   3'- -CCCgaCGCaCUCgCACuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155548 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155224 0.69 0.903511
Target:  5'- gGGGCgcgGCGcgGGGCG-GGccgUCGCGCa -3'
miRNA:   3'- -CCCGa--CGCa-CUCGCaCUucaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153633 0.67 0.946055
Target:  5'- cGGGCcggcccaUGCGggcGGGCGgGGAGagggCGCGCa -3'
miRNA:   3'- -CCCG-------ACGCa--CUCGCaCUUCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153455 0.69 0.909734
Target:  5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3'
miRNA:   3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153340 0.67 0.954831
Target:  5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3'
miRNA:   3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 153221 0.68 0.92587
Target:  5'- cGGGCgGCGagucgccuaucacgaUGGGCGcGggGUUCccggcgggggccgggGCGCg -3'
miRNA:   3'- -CCCGaCGC---------------ACUCGCaCuuCAAG---------------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 152736 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 148839 0.72 0.754839
Target:  5'- aGGGgUGCGcgGGGCucaccucgucgggGUGggGUUCGCGa -3'
miRNA:   3'- -CCCgACGCa-CUCG-------------CACuuCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 148428 0.73 0.726316
Target:  5'- cGGGg-GCG-GAGCGUGggG-UCGCGg -3'
miRNA:   3'- -CCCgaCGCaCUCGCACuuCaAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 147896 0.67 0.941973
Target:  5'- gGGGCUcGCGagggGGGCGcgGAGGgcgUCcCGCc -3'
miRNA:   3'- -CCCGA-CGCa---CUCGCa-CUUCa--AGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 146947 0.66 0.974431
Target:  5'- cGGGCU-CGUGgguccguccgGGCGgggugGGAGUggGCGCu -3'
miRNA:   3'- -CCCGAcGCAC----------UCGCa----CUUCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146757 0.7 0.866634
Target:  5'- cGGGCggacggucgGCGUGAGCGUcgucgaggcccaacGAGGgcCGCGa -3'
miRNA:   3'- -CCCGa--------CGCACUCGCA--------------CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 146645 0.73 0.716308
Target:  5'- gGGGUUGUGUGGGUGggGAGGggaGCGUu -3'
miRNA:   3'- -CCCGACGCACUCGCa-CUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146470 0.67 0.958648
Target:  5'- uGGGggGgGUGGGCGUaccGGgccUCACGCu -3'
miRNA:   3'- -CCCgaCgCACUCGCAcu-UCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146354 0.66 0.975977
Target:  5'- cGGCUGCGUcgcGGCGUucguccucgUCGCGCu -3'
miRNA:   3'- cCCGACGCAc--UCGCAcuuca----AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 145807 0.71 0.828868
Target:  5'- cGGGCUcgGUGUGGGCGgcGggGUcggcggccCACGCc -3'
miRNA:   3'- -CCCGA--CGCACUCGCa-CuuCAa-------GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.