miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 63962 0.74 0.319959
Target:  5'- cGUGUACACGUGCCUgCUG-CGC-CUCg -3'
miRNA:   3'- -CGCAUGUGCGCGGGgGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 114869 0.74 0.327036
Target:  5'- gGCGcGCACGCGCaCCCCCGUCa----- -3'
miRNA:   3'- -CGCaUGUGCGCG-GGGGGCAGcgagag -5'
21658 3' -60.5 NC_004812.1 + 62911 0.73 0.334227
Target:  5'- cGCGUGCACGCGCggaacgggcgCgCCCUGUCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCG----------G-GGGGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 121981 0.73 0.334227
Target:  5'- gGUGUGCACGUucgacgGCCCCgCCGUCGUgcgaUCg -3'
miRNA:   3'- -CGCAUGUGCG------CGGGG-GGCAGCGag--AG- -5'
21658 3' -60.5 NC_004812.1 + 106234 0.73 0.341534
Target:  5'- -gGUGCACGCGCCCCCggCGUCGg---- -3'
miRNA:   3'- cgCAUGUGCGCGGGGG--GCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 111641 0.73 0.348955
Target:  5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3'
miRNA:   3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 7047 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 132556 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 39592 0.73 0.36337
Target:  5'- --cUGCACGCGCCCCUCGUucauguaCGCcagCUCg -3'
miRNA:   3'- cgcAUGUGCGCGGGGGGCA-------GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 73767 0.73 0.36414
Target:  5'- cGCGcucgGCGCGCGCaCCCCCGgguaCGCUg-- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGCa---GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 53786 0.73 0.36414
Target:  5'- gGCGUggAgGCGCGCCgCCCCGUggagaggucgCGCUCg- -3'
miRNA:   3'- -CGCA--UgUGCGCGG-GGGGCA----------GCGAGag -5'
21658 3' -60.5 NC_004812.1 + 71299 0.73 0.36414
Target:  5'- gGCGccAC-CGaGCCCCCCGUCGCgagaCUCg -3'
miRNA:   3'- -CGCa-UGuGCgCGGGGGGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 144102 0.73 0.371902
Target:  5'- gGCGaACAUGCGCCCCCCaGUacggGC-CUCc -3'
miRNA:   3'- -CGCaUGUGCGCGGGGGG-CAg---CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 67487 0.73 0.371902
Target:  5'- cGCGgGCugGCGCCCgcgggCCGUCG-UCUCg -3'
miRNA:   3'- -CGCaUGugCGCGGGg----GGCAGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 125284 0.73 0.371902
Target:  5'- gGCGUACGCgGCgGCCgUCCUGUCGUUcCUCg -3'
miRNA:   3'- -CGCAUGUG-CG-CGG-GGGGCAGCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 126655 0.72 0.378984
Target:  5'- uGCuGUuCGCGCGCCCCgucgacgCCGUCGUgcugCUCg -3'
miRNA:   3'- -CG-CAuGUGCGCGGGG-------GGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 46864 0.72 0.395856
Target:  5'- cGCGUGCACGCGCCaCgUCaGUCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-GgGG-CAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 113035 0.72 0.395856
Target:  5'- gGCGUugACgucagGCGCCCCCUGUU--UCUCa -3'
miRNA:   3'- -CGCAugUG-----CGCGGGGGGCAGcgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 59287 0.72 0.404059
Target:  5'- cGCGgGCGCGCGgcaCCCgCCCGcCGCgagCUCg -3'
miRNA:   3'- -CGCaUGUGCGC---GGG-GGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 89956 0.72 0.404059
Target:  5'- aGCGgcgGCGCGCCUCCCGacgCGC-CUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCa--GCGaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.