miRNA display CGI

Results 21 - 40 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	151460	0.81	0.362996
	Target:  5'- gGCCcgGACCGCgGGCCGACGCcgccguccccgGGCGGCc -3' miRNA:   3'- -CGGa-UUGGUGgUCGGUUGUG-----------UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	139290	0.81	0.362996
	Target:  5'- cGCCcccACCACCAcccccGCCAACGgGACGGCc -3' miRNA:   3'- -CGGau-UGGUGGU-----CGGUUGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	58949	0.8	0.3796
	Target:  5'- cGCCUGGCCugCcgugaggcugggGGCCGAgAUGGCGGCg -3' miRNA:   3'- -CGGAUUGGugG------------UCGGUUgUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	82694	0.8	0.3796
	Target:  5'- cGCC--ACCGCCAGCCGggcugGCGCGAcuCGGCg -3' miRNA:   3'- -CGGauUGGUGGUCGGU-----UGUGUU--GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	114824	0.79	0.4143
	Target:  5'- gGUCUGGCCGCCcgagcGGCCGAgGCG-CGGCg -3' miRNA:   3'- -CGGAUUGGUGG-----UCGGUUgUGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	40288	0.79	0.423275
	Target:  5'- cGCC--GCCGCCAGCagGGCgACAACGGCc -3' miRNA:   3'- -CGGauUGGUGGUCGg-UUG-UGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	19008	0.79	0.429626
	Target:  5'- cGCCUcgaaGAUCACCAgGCCGGCGCuccauauguccaccGACGGCg -3' miRNA:   3'- -CGGA----UUGGUGGU-CGGUUGUG--------------UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	69572	0.79	0.431451
	Target:  5'- gGCCgcGCCG-CAGCCGccuccgaGCGCGACGGCg -3' miRNA:   3'- -CGGauUGGUgGUCGGU-------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	89209	0.79	0.432365
	Target:  5'- aGCCggGGCC-CCGGCUccGCGCGGCGGCg -3' miRNA:   3'- -CGGa-UUGGuGGUCGGu-UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152946	0.79	0.440643
	Target:  5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3' miRNA:   3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	27438	0.79	0.440643
	Target:  5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3' miRNA:   3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	127728	0.79	0.441569
	Target:  5'- cGCCgcgGCC-CgCGGCCAGCGCAcgcGCGGCg -3' miRNA:   3'- -CGGau-UGGuG-GUCGGUUGUGU---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1440	0.79	0.441569
	Target:  5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3' miRNA:   3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	126948	0.79	0.441569
	Target:  5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3' miRNA:   3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	76979	0.79	0.441569
	Target:  5'- gGCCggGGCCGCCGGCCAcggccgcccuCACcGCGGCc -3' miRNA:   3'- -CGGa-UUGGUGGUCGGUu---------GUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	35062	0.79	0.450882
	Target:  5'- uGCCgcgcGCCACCAGCCG-CGCGACGa- -3' miRNA:   3'- -CGGau--UGGUGGUCGGUuGUGUUGCcg -5'
21702	3'	-52.4	NC_004812.1	+	3745	0.79	0.460302
	Target:  5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3' miRNA:   3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	79453	0.79	0.460302
	Target:  5'- cGCCgcgggcgGGCUGCCGGCCGAgACG-CGGCg -3' miRNA:   3'- -CGGa------UUGGUGGUCGGUUgUGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	129253	0.79	0.460302
	Target:  5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3' miRNA:   3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	94310	0.78	0.469826
	Target:  5'- cGCUUggUCGCCGGCU-GCGCGGCGGUg -3' miRNA:   3'- -CGGAuuGGUGGUCGGuUGUGUUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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