miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 135252 1.1 0.034668
Target:  5'- gGGAAAGGAAACCCAGACGACAAAAAAg -3'
miRNA:   3'- -CCUUUCCUUUGGGUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 17946 0.85 0.641344
Target:  5'- gGGAGAGGGGgucGCCCGGGCGACGGc--- -3'
miRNA:   3'- -CCUUUCCUU---UGGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 52486 0.85 0.66364
Target:  5'- uGGAGAGGAAggaggacacGCCCgAGACGGCGGAGAc -3'
miRNA:   3'- -CCUUUCCUU---------UGGG-UCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 61524 0.83 0.729433
Target:  5'- cGGAAAGGAAGagccCCCGGACGGCGGc--- -3'
miRNA:   3'- -CCUUUCCUUU----GGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 37059 0.8 0.872687
Target:  5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3'
miRNA:   3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 6158 0.8 0.872687
Target:  5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3'
miRNA:   3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 5345 0.79 0.8954
Target:  5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3'
miRNA:   3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 36246 0.79 0.8954
Target:  5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3'
miRNA:   3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 81586 0.77 0.953033
Target:  5'- cGAGGGGGucGGCUCGGGCGACGAGGu- -3'
miRNA:   3'- cCUUUCCU--UUGGGUCUGCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 115622 0.77 0.961215
Target:  5'- gGGAAccagugGGGAAACCCGGAaaCGACAGu--- -3'
miRNA:   3'- -CCUU------UCCUUUGGGUCU--GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 155030 0.77 0.961215
Target:  5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3'
miRNA:   3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 29522 0.77 0.961215
Target:  5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3'
miRNA:   3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 118538 0.76 0.971549
Target:  5'- cGAGAGGGGAcacguCCCAGACGAgaaCAGAAGGg -3'
miRNA:   3'- cCUUUCCUUU-----GGGUCUGCU---GUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 149439 0.76 0.971549
Target:  5'- cGAGAGGGGAcacguCCCAGACGAgaaCAGAAGGg -3'
miRNA:   3'- cCUUUCCUUU-----GGGUCUGCU---GUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 34468 0.75 0.981811
Target:  5'- gGGAAGGGAacGACCgAGACGgucgcgcGCGGAGAGa -3'
miRNA:   3'- -CCUUUCCU--UUGGgUCUGC-------UGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 149764 0.75 0.982031
Target:  5'- gGGGAAGGAGGCCCGGcgggugugGCGAUgcuaauGAAAAAc -3'
miRNA:   3'- -CCUUUCCUUUGGGUC--------UGCUG------UUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 24256 0.75 0.982031
Target:  5'- gGGGAAGGAGGCCCGGcgggugugGCGAUgcuaauGAAAAAc -3'
miRNA:   3'- -CCUUUCCUUUGGGUC--------UGCUG------UUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 17817 0.74 0.989305
Target:  5'- aGAGGGGGuucgcggccacGACCCAGGCGGCcGGGAu -3'
miRNA:   3'- cCUUUCCU-----------UUGGGUCUGCUGuUUUUu -5'
21715 5' -44.3 NC_004812.1 + 37844 0.74 0.990701
Target:  5'- uGGggGGGAAGCggggaaaagaCAGugGGCAAGGGGg -3'
miRNA:   3'- -CCuuUCCUUUGg---------GUCugCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 6943 0.74 0.990701
Target:  5'- uGGggGGGAAGCggggaaaagaCAGugGGCAAGGGGg -3'
miRNA:   3'- -CCuuUCCUUUGg---------GUCugCUGUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.