miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 216 0.71 0.999374
Target:  5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3'
miRNA:   3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 1432 0.67 0.999996
Target:  5'- cGGGGAGG-GGCCgGGGCcGCGAGGGc -3'
miRNA:   3'- -CCUUUCCuUUGGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 2463 0.69 0.999938
Target:  5'- cGGccGAGGAcGCCCucgaAGACGACGAc--- -3'
miRNA:   3'- -CCu-UUCCUuUGGG----UCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 3037 0.67 0.999991
Target:  5'- aGAGGcGGuuGCCCAGcGCGGCGAGc-- -3'
miRNA:   3'- cCUUU-CCuuUGGGUC-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 4140 0.71 0.999033
Target:  5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 4859 0.66 0.999999
Target:  5'- gGGGAGGGGccgcGGCCCGcGCGAgAAAc-- -3'
miRNA:   3'- -CCUUUCCU----UUGGGUcUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 5054 0.71 0.999033
Target:  5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3'
miRNA:   3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 5285 0.69 0.999856
Target:  5'- cGggGGGAGGCCCGG--GAgGAGAAGc -3'
miRNA:   3'- cCuuUCCUUUGGGUCugCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 5345 0.79 0.8954
Target:  5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3'
miRNA:   3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 5390 0.67 0.999994
Target:  5'- cGGGAGGGggGucggggucuCCCAGggacGCGGCGGGc-- -3'
miRNA:   3'- -CCUUUCCuuU---------GGGUC----UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 5732 0.66 0.999999
Target:  5'- cGGGAGGAGggcgccgggcgccGCCCAGGCccACAGGGAc -3'
miRNA:   3'- cCUUUCCUU-------------UGGGUCUGc-UGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 6017 0.71 0.99881
Target:  5'- gGGAAGGGGGACgCGGGCaGCGAc--- -3'
miRNA:   3'- -CCUUUCCUUUGgGUCUGcUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 6158 0.8 0.872687
Target:  5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3'
miRNA:   3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 6445 0.66 0.999998
Target:  5'- cGggGGGAccGCCgGGACGACc----- -3'
miRNA:   3'- cCuuUCCUu-UGGgUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 6943 0.74 0.990701
Target:  5'- uGGggGGGAAGCggggaaaagaCAGugGGCAAGGGGg -3'
miRNA:   3'- -CCuuUCCUUUGg---------GUCugCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 7463 0.66 0.999999
Target:  5'- cGggGGGAAACUCGccguuuCGGCGAGGGGg -3'
miRNA:   3'- cCuuUCCUUUGGGUcu----GCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 7595 0.68 0.999976
Target:  5'- cGGGGAcGGAGGCCCGGggucggaggucGCGcCGGAGAc -3'
miRNA:   3'- -CCUUU-CCUUUGGGUC-----------UGCuGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 9670 0.68 0.999976
Target:  5'- gGGAGGGGGAcgGCCCGGAacgcgucacguuCGACu----- -3'
miRNA:   3'- -CCUUUCCUU--UGGGUCU------------GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 9672 0.71 0.999359
Target:  5'- cGGAcccacgagcccgcGAGGAAACCCAGAgGAa------ -3'
miRNA:   3'- -CCU-------------UUCCUUUGGGUCUgCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 10128 0.67 0.999991
Target:  5'- gGGAAaagcaaagguggcAGGGAGCgaCAGACGGCGAn--- -3'
miRNA:   3'- -CCUU-------------UCCUUUGg-GUCUGCUGUUuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.