Results 1 - 20 of 243 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 147997 | 0.72 | 0.997861 |
Target: 5'- cGGgcGGcGggGCCgaGGGCGACGGAGAAu -3' miRNA: 3'- -CCuuUC-CuuUGGg-UCUGCUGUUUUUU- -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 118402 | 0.73 | 0.996347 |
Target: 5'- aGGAGAGGG---CCGGGCGACGGGc-- -3' miRNA: 3'- -CCUUUCCUuugGGUCUGCUGUUUuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 67407 | 0.73 | 0.996347 |
Target: 5'- cGGAGccGGGGccccggcuCCCAGACGGCGGGGGu -3' miRNA: 3'- -CCUU--UCCUuu------GGGUCUGCUGUUUUUu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 39903 | 0.72 | 0.996928 |
Target: 5'- gGGucuAAGGGGACUgGG-CGACAAGAGAg -3' miRNA: 3'- -CCu--UUCCUUUGGgUCuGCUGUUUUUU- -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 85316 | 0.72 | 0.996928 |
Target: 5'- cGGAAgcccGGGcAGACCCAGGuCGGCGAu--- -3' miRNA: 3'- -CCUU----UCC-UUUGGGUCU-GCUGUUuuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 78038 | 0.72 | 0.997429 |
Target: 5'- gGGggGGGugGCCCgcAGGCGGCGc---- -3' miRNA: 3'- -CCuuUCCuuUGGG--UCUGCUGUuuuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 94017 | 0.72 | 0.997429 |
Target: 5'- aGGggGGGAAACgCGGcGCGAUggGGu- -3' miRNA: 3'- -CCuuUCCUUUGgGUC-UGCUGuuUUuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 90912 | 0.72 | 0.997861 |
Target: 5'- cGGGguGAGGAu-CUCGGACGACGAGc-- -3' miRNA: 3'- -CCU--UUCCUuuGGGUCUGCUGUUUuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 91607 | 0.72 | 0.997861 |
Target: 5'- cGGAAauGGGGGACCCGGGgGGgGAGc-- -3' miRNA: 3'- -CCUU--UCCUUUGGGUCUgCUgUUUuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 110134 | 0.73 | 0.995608 |
Target: 5'- uGGGAGGAcgacgacGACCCGGACG-CGGAGGc -3' miRNA: 3'- cCUUUCCU-------UUGGGUCUGCuGUUUUUu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 85756 | 0.73 | 0.994047 |
Target: 5'- cGGAGcugGGGAucAugCCGGACGACAc---- -3' miRNA: 3'- -CCUU---UCCU--UugGGUCUGCUGUuuuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 6943 | 0.74 | 0.990701 |
Target: 5'- uGGggGGGAAGCggggaaaagaCAGugGGCAAGGGGg -3' miRNA: 3'- -CCuuUCCUUUGg---------GUCugCUGUUUUUU- -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 52486 | 0.85 | 0.66364 |
Target: 5'- uGGAGAGGAAggaggacacGCCCgAGACGGCGGAGAc -3' miRNA: 3'- -CCUUUCCUU---------UGGG-UCUGCUGUUUUUu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 6158 | 0.8 | 0.872687 |
Target: 5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3' miRNA: 3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 5345 | 0.79 | 0.8954 |
Target: 5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3' miRNA: 3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 81586 | 0.77 | 0.953033 |
Target: 5'- cGAGGGGGucGGCUCGGGCGACGAGGu- -3' miRNA: 3'- cCUUUCCU--UUGGGUCUGCUGUUUUuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 155030 | 0.77 | 0.961215 |
Target: 5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3' miRNA: 3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 118538 | 0.76 | 0.971549 |
Target: 5'- cGAGAGGGGAcacguCCCAGACGAgaaCAGAAGGg -3' miRNA: 3'- cCUUUCCUUU-----GGGUCUGCU---GUUUUUU- -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 34468 | 0.75 | 0.981811 |
Target: 5'- gGGAAGGGAacGACCgAGACGgucgcgcGCGGAGAGa -3' miRNA: 3'- -CCUUUCCU--UUGGgUCUGC-------UGUUUUUU- -5' |
|||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 149764 | 0.75 | 0.982031 |
Target: 5'- gGGGAAGGAGGCCCGGcgggugugGCGAUgcuaauGAAAAAc -3' miRNA: 3'- -CCUUUCCUUUGGGUC--------UGCUG------UUUUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home