Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21716 | 3' | -58.5 | NC_004812.1 | + | 81252 | 0.66 | 0.815012 |
Target: 5'- uGCGUCGGGG-CGCUCGaGCGCgUGGa -3' miRNA: 3'- -UGCAGUCCUgGCGAGCgCGUGaGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 55880 | 0.66 | 0.83165 |
Target: 5'- uCGUCAGGugUGgUCGUaGCACgcgCGGa -3' miRNA: 3'- uGCAGUCCugGCgAGCG-CGUGa--GCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 94532 | 0.66 | 0.806451 |
Target: 5'- gACcUCGGGGCCGC-CGCcCugUCGGc -3' miRNA: 3'- -UGcAGUCCUGGCGaGCGcGugAGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 102895 | 0.66 | 0.839714 |
Target: 5'- uGCG-CGGGGCgGCggaccgGCGC-CUCGGGg -3' miRNA: 3'- -UGCaGUCCUGgCGag----CGCGuGAGCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 76255 | 0.66 | 0.806451 |
Target: 5'- gGCGgcCAGGcCCGCgCGCGCcgcCUCGAc -3' miRNA: 3'- -UGCa-GUCCuGGCGaGCGCGu--GAGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 150598 | 0.66 | 0.83165 |
Target: 5'- gACGgggCGGcGCCGC-CGCGCGC-CGAc -3' miRNA: 3'- -UGCa--GUCcUGGCGaGCGCGUGaGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 37629 | 0.66 | 0.839714 |
Target: 5'- cGCGUCca-GCUGCUCGCgGCGCaUGAGg -3' miRNA: 3'- -UGCAGuccUGGCGAGCG-CGUGaGCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 78522 | 0.66 | 0.842889 |
Target: 5'- gACGUCAuccgcaccacGGACgacuuccacggggaGCUCGCGgaGCUCGAGc -3' miRNA: 3'- -UGCAGU----------CCUGg-------------CGAGCGCg-UGAGCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 130756 | 0.66 | 0.838915 |
Target: 5'- cCGUCGGGGCgCGCcgagUCGgccgccgcggcccCGCGCUCGGc -3' miRNA: 3'- uGCAGUCCUG-GCG----AGC-------------GCGUGAGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 98320 | 0.66 | 0.83165 |
Target: 5'- cGCG-CGGGugCugGCUCGCGUACgcCGAc -3' miRNA: 3'- -UGCaGUCCugG--CGAGCGCGUGa-GCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 44854 | 0.66 | 0.823414 |
Target: 5'- aACcUCAGG-CCGUagCGCGCGCgcaCGAGc -3' miRNA: 3'- -UGcAGUCCuGGCGa-GCGCGUGa--GCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 48255 | 0.66 | 0.806451 |
Target: 5'- aGCG-CGGcGACguCGUcCGCGCGCUCGAa -3' miRNA: 3'- -UGCaGUC-CUG--GCGaGCGCGUGAGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 115438 | 0.66 | 0.815012 |
Target: 5'- gACGUUGGGGCgGCgCGCcgGgGCUCGAa -3' miRNA: 3'- -UGCAGUCCUGgCGaGCG--CgUGAGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 35628 | 0.66 | 0.830834 |
Target: 5'- aACG-CGGGggaggguugacguGCCGCgggCGCGCGCgggggUCGGGg -3' miRNA: 3'- -UGCaGUCC-------------UGGCGa--GCGCGUG-----AGCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 127806 | 0.66 | 0.814163 |
Target: 5'- gGCGUCGGGGuCCgGCUCgagcaggGCGCGCgCGcAGa -3' miRNA: 3'- -UGCAGUCCU-GG-CGAG-------CGCGUGaGC-UC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 25905 | 0.66 | 0.815012 |
Target: 5'- cGCGccCAGcGCCGCggGCGCGCgucgCGAGa -3' miRNA: 3'- -UGCa-GUCcUGGCGagCGCGUGa---GCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 128562 | 0.66 | 0.823414 |
Target: 5'- cGCGgcgagCAGGaaggagagGCCGC-CGCGCGCgUCGGu -3' miRNA: 3'- -UGCa----GUCC--------UGGCGaGCGCGUG-AGCUc -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 71943 | 0.66 | 0.815012 |
Target: 5'- gACGgcgCGGGgcggcccuGCCGCgaCGCGCGCcgCGGGa -3' miRNA: 3'- -UGCa--GUCC--------UGGCGa-GCGCGUGa-GCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 35130 | 0.66 | 0.806451 |
Target: 5'- aGCGUCAGGuCCagggaCUCcagGCGCACguccgUCGAGg -3' miRNA: 3'- -UGCAGUCCuGGc----GAG---CGCGUG-----AGCUC- -5' |
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21716 | 3' | -58.5 | NC_004812.1 | + | 147874 | 0.66 | 0.815012 |
Target: 5'- -gGUCGGGGCCG-UCGagGCGUUCGGGg -3' miRNA: 3'- ugCAGUCCUGGCgAGCg-CGUGAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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