miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 3' -58.5 NC_004812.1 + 136318 1.09 0.001942
Target:  5'- gACGUCAGGACCGCUCGCGCACUCGAGg -3'
miRNA:   3'- -UGCAGUCCUGGCGAGCGCGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 62260 0.75 0.336831
Target:  5'- cGCGcCGGGGCCGCgcCGCGCGCg-GAGa -3'
miRNA:   3'- -UGCaGUCCUGGCGa-GCGCGUGagCUC- -5'
21716 3' -58.5 NC_004812.1 + 77231 0.75 0.344292
Target:  5'- cGCG-CAGGGCCGCgUCGagggccucgaaGCGCUCGAGc -3'
miRNA:   3'- -UGCaGUCCUGGCG-AGCg----------CGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 10856 0.74 0.37531
Target:  5'- gACGUCGGGucgcuCCGCcCGCGCGCccCGGGu -3'
miRNA:   3'- -UGCAGUCCu----GGCGaGCGCGUGa-GCUC- -5'
21716 3' -58.5 NC_004812.1 + 107266 0.74 0.399782
Target:  5'- uGCGUCAGcucGACCGC-CGCGUcgGCUCGGu -3'
miRNA:   3'- -UGCAGUC---CUGGCGaGCGCG--UGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 19434 0.72 0.460662
Target:  5'- cGCGgccgCAGGACCGcCUCcCGCACcUCGAa -3'
miRNA:   3'- -UGCa---GUCCUGGC-GAGcGCGUG-AGCUc -5'
21716 3' -58.5 NC_004812.1 + 139892 0.72 0.468843
Target:  5'- gGCGagCGGGACCggccccgcggucGCUCGCGCACccgccggUCGGGg -3'
miRNA:   3'- -UGCa-GUCCUGG------------CGAGCGCGUG-------AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 153917 0.72 0.469757
Target:  5'- cGCGUCuucGGGCCcgGCgucuUCGCGCGCgUCGAGg -3'
miRNA:   3'- -UGCAGu--CCUGG--CG----AGCGCGUG-AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 28409 0.72 0.469757
Target:  5'- cGCGUCuucGGGCCcgGCgucuUCGCGCGCgUCGAGg -3'
miRNA:   3'- -UGCAGu--CCUGG--CG----AGCGCGUG-AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 70529 0.72 0.488216
Target:  5'- uCGaUCAGGACCGC-CaGCGCGCUgCGAc -3'
miRNA:   3'- uGC-AGUCCUGGCGaG-CGCGUGA-GCUc -5'
21716 3' -58.5 NC_004812.1 + 52897 0.72 0.497574
Target:  5'- gACGgugCAGGGCuCGagggCGuCGCGCUCGAGg -3'
miRNA:   3'- -UGCa--GUCCUG-GCga--GC-GCGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 106754 0.72 0.497574
Target:  5'- uACGUCAuGGGgCGCUCGuCGCugaacuCUCGGGc -3'
miRNA:   3'- -UGCAGU-CCUgGCGAGC-GCGu-----GAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 7063 0.72 0.497574
Target:  5'- cGCGcCAGGGCCGCUCcagGCGCcCUCu-- -3'
miRNA:   3'- -UGCaGUCCUGGCGAG---CGCGuGAGcuc -5'
21716 3' -58.5 NC_004812.1 + 60347 0.72 0.497574
Target:  5'- gGCGcCAGGcCCGCcCGCGC-CUCGGa -3'
miRNA:   3'- -UGCaGUCCuGGCGaGCGCGuGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 37964 0.72 0.497574
Target:  5'- cGCGcCAGGGCCGCUCcagGCGCcCUCu-- -3'
miRNA:   3'- -UGCaGUCCUGGCGAG---CGCGuGAGcuc -5'
21716 3' -58.5 NC_004812.1 + 59672 0.72 0.50701
Target:  5'- gGCG-CGGGcGCCGCguugcCGCGCGCgCGAGg -3'
miRNA:   3'- -UGCaGUCC-UGGCGa----GCGCGUGaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 145455 0.71 0.516522
Target:  5'- cGCG-CGGaGCUGCUCGCGUACcCGAGu -3'
miRNA:   3'- -UGCaGUCcUGGCGAGCGCGUGaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 74741 0.71 0.516522
Target:  5'- cCGUCuGGagcgcgcgcaGCUGCUCGCGCGCggcccCGAGg -3'
miRNA:   3'- uGCAGuCC----------UGGCGAGCGCGUGa----GCUC- -5'
21716 3' -58.5 NC_004812.1 + 13064 0.71 0.526105
Target:  5'- cGCGcCAGGGCCGcCUCGUucacgGCggaaauGCUCGAGg -3'
miRNA:   3'- -UGCaGUCCUGGC-GAGCG-----CG------UGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 36430 0.71 0.535754
Target:  5'- gGCGUUgcguAGGAagaCCGCggcCGCGUugUCGAGg -3'
miRNA:   3'- -UGCAG----UCCU---GGCGa--GCGCGugAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.