miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 3' -58.5 NC_004812.1 + 75907 0.69 0.64366
Target:  5'- gGCGUUcgccgcgAGGGCCuGCUCgGCGCGCUUGcGGa -3'
miRNA:   3'- -UGCAG-------UCCUGG-CGAG-CGCGUGAGC-UC- -5'
21716 3' -58.5 NC_004812.1 + 12981 0.71 0.565047
Target:  5'- cGCGccCGGGGCCGCgcUCGCGCuCUCGc- -3'
miRNA:   3'- -UGCa-GUCCUGGCG--AGCGCGuGAGCuc -5'
21716 3' -58.5 NC_004812.1 + 121283 0.71 0.565047
Target:  5'- cGCGgccCGGGGCCGcCUCGgGCAggCGAGu -3'
miRNA:   3'- -UGCa--GUCCUGGC-GAGCgCGUgaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 66655 0.7 0.574908
Target:  5'- cGCGUCGGGaggcgcgccGCCGCUCGCGgGCcccgUCGu- -3'
miRNA:   3'- -UGCAGUCC---------UGGCGAGCGCgUG----AGCuc -5'
21716 3' -58.5 NC_004812.1 + 42573 0.7 0.574908
Target:  5'- cCGUCGGGAgCGacgCGCGCGCcgacggCGAGa -3'
miRNA:   3'- uGCAGUCCUgGCga-GCGCGUGa-----GCUC- -5'
21716 3' -58.5 NC_004812.1 + 55981 0.7 0.594741
Target:  5'- cCGcCAGGcggucGCCGaaCGCGCGCUCGAa -3'
miRNA:   3'- uGCaGUCC-----UGGCgaGCGCGUGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 94631 0.7 0.598722
Target:  5'- gGCGUUGGGACCgGCgacgagggcgcgggCGCGaGCUCGGGa -3'
miRNA:   3'- -UGCAGUCCUGG-CGa-------------GCGCgUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 100677 0.7 0.624669
Target:  5'- gGCGUCGGGcccGgCGCUCGCGCGggCGuGu -3'
miRNA:   3'- -UGCAGUCC---UgGCGAGCGCGUgaGCuC- -5'
21716 3' -58.5 NC_004812.1 + 101962 0.69 0.631666
Target:  5'- gGCGUCAGGggccgcggacgcccGCCGCccgcgcggggggUCGCGCgACUCGcGg -3'
miRNA:   3'- -UGCAGUCC--------------UGGCG------------AGCGCG-UGAGCuC- -5'
21716 3' -58.5 NC_004812.1 + 83262 0.71 0.565047
Target:  5'- gGCGUCggccgGGGcGCCGCUCGCcGCACgCGGa -3'
miRNA:   3'- -UGCAG-----UCC-UGGCGAGCG-CGUGaGCUc -5'
21716 3' -58.5 NC_004812.1 + 154237 0.71 0.55523
Target:  5'- gGCG-CuGGACCGCgacgccgCGCGCGC-CGGGc -3'
miRNA:   3'- -UGCaGuCCUGGCGa------GCGCGUGaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 36430 0.71 0.535754
Target:  5'- gGCGUUgcguAGGAagaCCGCggcCGCGUugUCGAGg -3'
miRNA:   3'- -UGCAG----UCCU---GGCGa--GCGCGugAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 77231 0.75 0.344292
Target:  5'- cGCG-CAGGGCCGCgUCGagggccucgaaGCGCUCGAGc -3'
miRNA:   3'- -UGCaGUCCUGGCG-AGCg----------CGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 19434 0.72 0.460662
Target:  5'- cGCGgccgCAGGACCGcCUCcCGCACcUCGAa -3'
miRNA:   3'- -UGCa---GUCCUGGC-GAGcGCGUG-AGCUc -5'
21716 3' -58.5 NC_004812.1 + 153917 0.72 0.469757
Target:  5'- cGCGUCuucGGGCCcgGCgucuUCGCGCGCgUCGAGg -3'
miRNA:   3'- -UGCAGu--CCUGG--CG----AGCGCGUG-AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 70529 0.72 0.488216
Target:  5'- uCGaUCAGGACCGC-CaGCGCGCUgCGAc -3'
miRNA:   3'- uGC-AGUCCUGGCGaG-CGCGUGA-GCUc -5'
21716 3' -58.5 NC_004812.1 + 7063 0.72 0.497574
Target:  5'- cGCGcCAGGGCCGCUCcagGCGCcCUCu-- -3'
miRNA:   3'- -UGCaGUCCUGGCGAG---CGCGuGAGcuc -5'
21716 3' -58.5 NC_004812.1 + 52897 0.72 0.497574
Target:  5'- gACGgugCAGGGCuCGagggCGuCGCGCUCGAGg -3'
miRNA:   3'- -UGCa--GUCCUG-GCga--GC-GCGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 106754 0.72 0.497574
Target:  5'- uACGUCAuGGGgCGCUCGuCGCugaacuCUCGGGc -3'
miRNA:   3'- -UGCAGU-CCUgGCGAGC-GCGu-----GAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 74741 0.71 0.516522
Target:  5'- cCGUCuGGagcgcgcgcaGCUGCUCGCGCGCggcccCGAGg -3'
miRNA:   3'- uGCAGuCC----------UGGCGAGCGCGUGa----GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.