miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 5' -55.4 NC_004812.1 + 137380 1.06 0.004224
Target:  5'- cGACUACAUCCACGGCGAGGGCAUCAUa -3'
miRNA:   3'- -CUGAUGUAGGUGCCGCUCCCGUAGUA- -5'
21718 5' -55.4 NC_004812.1 + 43697 0.76 0.395425
Target:  5'- cGCUGCcUUCGCGGCGAGGGCGc--- -3'
miRNA:   3'- cUGAUGuAGGUGCCGCUCCCGUagua -5'
21718 5' -55.4 NC_004812.1 + 79607 0.76 0.404087
Target:  5'- aGCUGCAgcacggCCGCGGUGAGGGCGg--- -3'
miRNA:   3'- cUGAUGUa-----GGUGCCGCUCCCGUagua -5'
21718 5' -55.4 NC_004812.1 + 127680 0.74 0.516527
Target:  5'- cGGCcACcUCCACGGCGGcGGCGUCGUc -3'
miRNA:   3'- -CUGaUGuAGGUGCCGCUcCCGUAGUA- -5'
21718 5' -55.4 NC_004812.1 + 2171 0.74 0.516527
Target:  5'- cGGCcACcUCCACGGCGGcGGCGUCGUc -3'
miRNA:   3'- -CUGaUGuAGGUGCCGCUcCCGUAGUA- -5'
21718 5' -55.4 NC_004812.1 + 105573 0.73 0.536542
Target:  5'- uGGCUGCcgGUCCGCGGCGAuGGCAcCGa -3'
miRNA:   3'- -CUGAUG--UAGGUGCCGCUcCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 28648 0.73 0.567042
Target:  5'- gGACUuCcgCCGCGGCGAGGcGCAcUCGc -3'
miRNA:   3'- -CUGAuGuaGGUGCCGCUCC-CGU-AGUa -5'
21718 5' -55.4 NC_004812.1 + 154156 0.73 0.567042
Target:  5'- gGACUuCcgCCGCGGCGAGGcGCAcUCGc -3'
miRNA:   3'- -CUGAuGuaGGUGCCGCUCC-CGU-AGUa -5'
21718 5' -55.4 NC_004812.1 + 18423 0.72 0.577312
Target:  5'- cGCUGgGUCgcgCGCGGCGGGGGCcgCGUc -3'
miRNA:   3'- cUGAUgUAG---GUGCCGCUCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 19645 0.72 0.62912
Target:  5'- cGACguggGCcgCCAgGGCGAGGGgGUCc- -3'
miRNA:   3'- -CUGa---UGuaGGUgCCGCUCCCgUAGua -5'
21718 5' -55.4 NC_004812.1 + 101090 0.71 0.649915
Target:  5'- ---aGCGUCCACGGCGAGGuGCu---- -3'
miRNA:   3'- cugaUGUAGGUGCCGCUCC-CGuagua -5'
21718 5' -55.4 NC_004812.1 + 21139 0.71 0.660295
Target:  5'- uGugUgGCGUgCCGCGGCGGGGGUcUCGg -3'
miRNA:   3'- -CugA-UGUA-GGUGCCGCUCCCGuAGUa -5'
21718 5' -55.4 NC_004812.1 + 114949 0.71 0.660295
Target:  5'- cGACcucgGCGUCCGCGGCGuuGGCGaCGUc -3'
miRNA:   3'- -CUGa---UGUAGGUGCCGCucCCGUaGUA- -5'
21718 5' -55.4 NC_004812.1 + 45746 0.71 0.670652
Target:  5'- gGGCUccGCGgagCCcgaggggagACGGCGAGGGCGUCu- -3'
miRNA:   3'- -CUGA--UGUa--GG---------UGCCGCUCCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 11664 0.71 0.680976
Target:  5'- cACgggGCGUCCGcCGGCGAGcGGCAcUCGg -3'
miRNA:   3'- cUGa--UGUAGGU-GCCGCUC-CCGU-AGUa -5'
21718 5' -55.4 NC_004812.1 + 126342 0.7 0.70149
Target:  5'- uGCUGCGcCCugGGCccGGGGGCGUgGUg -3'
miRNA:   3'- cUGAUGUaGGugCCG--CUCCCGUAgUA- -5'
21718 5' -55.4 NC_004812.1 + 108250 0.7 0.70149
Target:  5'- cGGCgGCGUCCGCGGCGgagcccucGGcGGCGUCc- -3'
miRNA:   3'- -CUGaUGUAGGUGCCGC--------UC-CCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 47764 0.7 0.731785
Target:  5'- ---aGCG-CCGCGGCGcugGGGGCGUCGg -3'
miRNA:   3'- cugaUGUaGGUGCCGC---UCCCGUAGUa -5'
21718 5' -55.4 NC_004812.1 + 133681 0.7 0.731785
Target:  5'- aGACUcuggGCGUCCAgGcGCGGGGGCG-CGg -3'
miRNA:   3'- -CUGA----UGUAGGUgC-CGCUCCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 104548 0.7 0.731785
Target:  5'- aACgucgGCAUCCugGGCGAccucGGGCGagaUCAg -3'
miRNA:   3'- cUGa---UGUAGGugCCGCU----CCCGU---AGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.