Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 72211 | 0.67 | 0.859218 |
Target: 5'- cGCgggGCGUCCGCGGCcucgcggacugcggcGGGGCGUCc- -3' miRNA: 3'- cUGa--UGUAGGUGCCGc--------------UCCCGUAGua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 122440 | 0.69 | 0.770886 |
Target: 5'- gGGCgGCGUCUccucggGCGGCGGGGGCG-CGg -3' miRNA: 3'- -CUGaUGUAGG------UGCCGCUCCCGUaGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 22102 | 0.69 | 0.780366 |
Target: 5'- uGGCggugGCGUCCAUGGCGAugauccggGGGCAcgCGc -3' miRNA: 3'- -CUGa---UGUAGGUGCCGCU--------CCCGUa-GUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 7707 | 0.68 | 0.798904 |
Target: 5'- cGCgccgaGUCCGCGGCGGGGGUcUCc- -3' miRNA: 3'- cUGaug--UAGGUGCCGCUCCCGuAGua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 116152 | 0.68 | 0.81682 |
Target: 5'- gGGCcACAgggCCGCGGCGc-GGCAUCGg -3' miRNA: 3'- -CUGaUGUa--GGUGCCGCucCCGUAGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 73446 | 0.68 | 0.842374 |
Target: 5'- gGGCcGCGcgCCACGGCGccAGGGgGUCGg -3' miRNA: 3'- -CUGaUGUa-GGUGCCGC--UCCCgUAGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 97425 | 0.68 | 0.842374 |
Target: 5'- --gUGgGUCgACGGCGAcGGCAUCAa -3' miRNA: 3'- cugAUgUAGgUGCCGCUcCCGUAGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 12841 | 0.67 | 0.850507 |
Target: 5'- uGGCUGC-UCCACGGUGuAGuGGCAg--- -3' miRNA: 3'- -CUGAUGuAGGUGCCGC-UC-CCGUagua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 45697 | 0.67 | 0.858437 |
Target: 5'- uGCUACGaUCGCGGCGccGGGCGcUCAUc -3' miRNA: 3'- cUGAUGUaGGUGCCGCu-CCCGU-AGUA- -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 115584 | 0.69 | 0.770886 |
Target: 5'- aGACgGCuUCCGCGGCGGGcGGCGg--- -3' miRNA: 3'- -CUGaUGuAGGUGCCGCUC-CCGUagua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 22762 | 0.69 | 0.761279 |
Target: 5'- gGACcuggUGCGUCCA-GGUGGGGGCGUUu- -3' miRNA: 3'- -CUG----AUGUAGGUgCCGCUCCCGUAGua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 126978 | 0.69 | 0.751553 |
Target: 5'- cGACgccgGCGUCCuCGGCGGGcGGCggCGg -3' miRNA: 3'- -CUGa---UGUAGGuGCCGCUC-CCGuaGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 79607 | 0.76 | 0.404087 |
Target: 5'- aGCUGCAgcacggCCGCGGUGAGGGCGg--- -3' miRNA: 3'- cUGAUGUa-----GGUGCCGCUCCCGUagua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 127680 | 0.74 | 0.516527 |
Target: 5'- cGGCcACcUCCACGGCGGcGGCGUCGUc -3' miRNA: 3'- -CUGaUGuAGGUGCCGCUcCCGUAGUA- -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 154156 | 0.73 | 0.567042 |
Target: 5'- gGACUuCcgCCGCGGCGAGGcGCAcUCGc -3' miRNA: 3'- -CUGAuGuaGGUGCCGCUCC-CGU-AGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 19645 | 0.72 | 0.62912 |
Target: 5'- cGACguggGCcgCCAgGGCGAGGGgGUCc- -3' miRNA: 3'- -CUGa---UGuaGGUgCCGCUCCCgUAGua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 45746 | 0.71 | 0.670652 |
Target: 5'- gGGCUccGCGgagCCcgaggggagACGGCGAGGGCGUCu- -3' miRNA: 3'- -CUGA--UGUa--GG---------UGCCGCUCCCGUAGua -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 104548 | 0.7 | 0.731785 |
Target: 5'- aACgucgGCAUCCugGGCGAccucGGGCGagaUCAg -3' miRNA: 3'- cUGa---UGUAGGugCCGCU----CCCGU---AGUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 35463 | 0.69 | 0.751553 |
Target: 5'- cGCUGCAgcgCCGCGGCGucGGCGcgCGa -3' miRNA: 3'- cUGAUGUa--GGUGCCGCucCCGUa-GUa -5' |
|||||||
21718 | 5' | -55.4 | NC_004812.1 | + | 70025 | 0.69 | 0.751553 |
Target: 5'- aACUuCAUCCGCggacaGGCGGGGGCGcUCGc -3' miRNA: 3'- cUGAuGUAGGUG-----CCGCUCCCGU-AGUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home