miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 5' -55.4 NC_004812.1 + 1470 0.69 0.751553
Target:  5'- cGACgccgGCGUCCuCGGCGGGcGGCggCGg -3'
miRNA:   3'- -CUGa---UGUAGGuGCCGCUC-CCGuaGUa -5'
21718 5' -55.4 NC_004812.1 + 2171 0.74 0.516527
Target:  5'- cGGCcACcUCCACGGCGGcGGCGUCGUc -3'
miRNA:   3'- -CUGaUGuAGGUGCCGCUcCCGUAGUA- -5'
21718 5' -55.4 NC_004812.1 + 6037 0.66 0.894797
Target:  5'- cGACUGCGcgCCguaggGCGGCGAGGGgAa--- -3'
miRNA:   3'- -CUGAUGUa-GG-----UGCCGCUCCCgUagua -5'
21718 5' -55.4 NC_004812.1 + 7707 0.68 0.798904
Target:  5'- cGCgccgaGUCCGCGGCGGGGGUcUCc- -3'
miRNA:   3'- cUGaug--UAGGUGCCGCUCCCGuAGua -5'
21718 5' -55.4 NC_004812.1 + 11664 0.71 0.680976
Target:  5'- cACgggGCGUCCGcCGGCGAGcGGCAcUCGg -3'
miRNA:   3'- cUGa--UGUAGGU-GCCGCUC-CCGU-AGUa -5'
21718 5' -55.4 NC_004812.1 + 12841 0.67 0.850507
Target:  5'- uGGCUGC-UCCACGGUGuAGuGGCAg--- -3'
miRNA:   3'- -CUGAUGuAGGUGCCGC-UC-CCGUagua -5'
21718 5' -55.4 NC_004812.1 + 18423 0.72 0.577312
Target:  5'- cGCUGgGUCgcgCGCGGCGGGGGCcgCGUc -3'
miRNA:   3'- cUGAUgUAG---GUGCCGCUCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 19645 0.72 0.62912
Target:  5'- cGACguggGCcgCCAgGGCGAGGGgGUCc- -3'
miRNA:   3'- -CUGa---UGuaGGUgCCGCUCCCgUAGua -5'
21718 5' -55.4 NC_004812.1 + 21139 0.71 0.660295
Target:  5'- uGugUgGCGUgCCGCGGCGGGGGUcUCGg -3'
miRNA:   3'- -CugA-UGUA-GGUGCCGCUCCCGuAGUa -5'
21718 5' -55.4 NC_004812.1 + 22102 0.69 0.780366
Target:  5'- uGGCggugGCGUCCAUGGCGAugauccggGGGCAcgCGc -3'
miRNA:   3'- -CUGa---UGUAGGUGCCGCU--------CCCGUa-GUa -5'
21718 5' -55.4 NC_004812.1 + 22762 0.69 0.761279
Target:  5'- gGACcuggUGCGUCCA-GGUGGGGGCGUUu- -3'
miRNA:   3'- -CUG----AUGUAGGUgCCGCUCCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 23411 0.66 0.907715
Target:  5'- cGACggGCGUCCgGCGGCGucGGCGaCGa -3'
miRNA:   3'- -CUGa-UGUAGG-UGCCGCucCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 25112 0.67 0.873655
Target:  5'- cGACgcGCGuUCCGgGGCGuGGGCcgCAUa -3'
miRNA:   3'- -CUGa-UGU-AGGUgCCGCuCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 26722 0.67 0.873655
Target:  5'- aGGC-GCGUCgCACGGCGGgccguGGGCGUUg- -3'
miRNA:   3'- -CUGaUGUAG-GUGCCGCU-----CCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 28648 0.73 0.567042
Target:  5'- gGACUuCcgCCGCGGCGAGGcGCAcUCGc -3'
miRNA:   3'- -CUGAuGuaGGUGCCGCUCC-CGU-AGUa -5'
21718 5' -55.4 NC_004812.1 + 35463 0.69 0.751553
Target:  5'- cGCUGCAgcgCCGCGGCGucGGCGcgCGa -3'
miRNA:   3'- cUGAUGUa--GGUGCCGCucCCGUa-GUa -5'
21718 5' -55.4 NC_004812.1 + 36938 0.66 0.894797
Target:  5'- cGACUGCGcgCCguaggGCGGCGAGGGgAa--- -3'
miRNA:   3'- -CUGAUGUa-GG-----UGCCGCUCCCgUagua -5'
21718 5' -55.4 NC_004812.1 + 38608 0.68 0.798904
Target:  5'- cGCgccgaGUCCGCGGCGGGGGUcUCc- -3'
miRNA:   3'- cUGaug--UAGGUGCCGCUCCCGuAGua -5'
21718 5' -55.4 NC_004812.1 + 43697 0.76 0.395425
Target:  5'- cGCUGCcUUCGCGGCGAGGGCGc--- -3'
miRNA:   3'- cUGAUGuAGGUGCCGCUCCCGUagua -5'
21718 5' -55.4 NC_004812.1 + 45697 0.67 0.858437
Target:  5'- uGCUACGaUCGCGGCGccGGGCGcUCAUc -3'
miRNA:   3'- cUGAUGUaGGUGCCGCu-CCCGU-AGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.