miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 5' -56.9 NC_004812.1 + 137589 1.1 0.00198
Target:  5'- uGGACAUAUGGAGCGCCGGCCUGGUGAu -3'
miRNA:   3'- -CCUGUAUACCUCGCGGCCGGACCACU- -5'
21719 5' -56.9 NC_004812.1 + 60985 0.78 0.258943
Target:  5'- uGGGCGgagGUGGAGC-CCGGCCcGGUGc -3'
miRNA:   3'- -CCUGUa--UACCUCGcGGCCGGaCCACu -5'
21719 5' -56.9 NC_004812.1 + 82008 0.76 0.35653
Target:  5'- uGGGCGUggccGUGGAGCGCCacgacGGCCUGcUGGc -3'
miRNA:   3'- -CCUGUA----UACCUCGCGG-----CCGGACcACU- -5'
21719 5' -56.9 NC_004812.1 + 1488 0.73 0.486625
Target:  5'- cGGGCGgcggcGGAGCGCCGGCC-GGc-- -3'
miRNA:   3'- -CCUGUaua--CCUCGCGGCCGGaCCacu -5'
21719 5' -56.9 NC_004812.1 + 126996 0.73 0.486625
Target:  5'- cGGGCGgcggcGGAGCGCCGGCC-GGc-- -3'
miRNA:   3'- -CCUGUaua--CCUCGCGGCCGGaCCacu -5'
21719 5' -56.9 NC_004812.1 + 32077 0.73 0.52503
Target:  5'- gGGGCccGUGGGGC-CCGGCCccggaggucgccUGGUGGg -3'
miRNA:   3'- -CCUGuaUACCUCGcGGCCGG------------ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 122061 0.73 0.52503
Target:  5'- gGGACu--UGG-GCGCCGGgCCUGGg-- -3'
miRNA:   3'- -CCUGuauACCuCGCGGCC-GGACCacu -5'
21719 5' -56.9 NC_004812.1 + 152962 0.73 0.52503
Target:  5'- gGGACu--UGG-GCGCCGGgCCUGGg-- -3'
miRNA:   3'- -CCUGuauACCuCGCGGCC-GGACCacu -5'
21719 5' -56.9 NC_004812.1 + 103386 0.72 0.554569
Target:  5'- cGACAUGcUGGGGCGCaucgccaucGCCUGGUGu -3'
miRNA:   3'- cCUGUAU-ACCUCGCGgc-------CGGACCACu -5'
21719 5' -56.9 NC_004812.1 + 155934 0.72 0.564528
Target:  5'- cGGGCcgcgGGAGCGCCGGggugcgaaCCUGGggcgGAa -3'
miRNA:   3'- -CCUGuauaCCUCGCGGCC--------GGACCa---CU- -5'
21719 5' -56.9 NC_004812.1 + 30426 0.72 0.564528
Target:  5'- cGGGCcgcgGGAGCGCCGGggugcgaaCCUGGggcgGAa -3'
miRNA:   3'- -CCUGuauaCCUCGCGGCC--------GGACCa---CU- -5'
21719 5' -56.9 NC_004812.1 + 101183 0.72 0.564528
Target:  5'- gGGACGgucGUGGAcaaccGCGCCGcGCCgggGGUGu -3'
miRNA:   3'- -CCUGUa--UACCU-----CGCGGC-CGGa--CCACu -5'
21719 5' -56.9 NC_004812.1 + 137040 0.72 0.574533
Target:  5'- cGGAgGUGgccGGGGUggugGCCGGCCUGGg-- -3'
miRNA:   3'- -CCUgUAUa--CCUCG----CGGCCGGACCacu -5'
21719 5' -56.9 NC_004812.1 + 145350 0.72 0.574533
Target:  5'- gGGGCGgccGUGGGGCuggccguuGCCGGCCUGuccguGUGGg -3'
miRNA:   3'- -CCUGUa--UACCUCG--------CGGCCGGAC-----CACU- -5'
21719 5' -56.9 NC_004812.1 + 123025 0.71 0.629087
Target:  5'- gGGGCGgua-GAGCaggaagcgcuccccgGCCGGCUUGGUGAg -3'
miRNA:   3'- -CCUGUauacCUCG---------------CGGCCGGACCACU- -5'
21719 5' -56.9 NC_004812.1 + 78471 0.71 0.635173
Target:  5'- gGGucCAUcGUGGGGCGCCuGGCgCUGGcGAa -3'
miRNA:   3'- -CCu-GUA-UACCUCGCGG-CCG-GACCaCU- -5'
21719 5' -56.9 NC_004812.1 + 13392 0.71 0.635173
Target:  5'- cGGGgGUcgGGGGCGCggcgggggugaCGGCCggaggGGUGGc -3'
miRNA:   3'- -CCUgUAuaCCUCGCG-----------GCCGGa----CCACU- -5'
21719 5' -56.9 NC_004812.1 + 17599 0.71 0.635173
Target:  5'- uGGGCGUcggaGGAcuuccGCGCCGGCCUcguguccuGGUGGu -3'
miRNA:   3'- -CCUGUAua--CCU-----CGCGGCCGGA--------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 97391 0.71 0.645315
Target:  5'- cGGGCGUG-GGcGCGCgGGCCucgggcgcguacUGGUGGg -3'
miRNA:   3'- -CCUGUAUaCCuCGCGgCCGG------------ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 139952 0.71 0.645315
Target:  5'- gGGGCGgggggccgGGAGCGCgCGGCgUGGcgGAc -3'
miRNA:   3'- -CCUGUaua-----CCUCGCG-GCCGgACCa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.