miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 5' -56.9 NC_004812.1 + 1488 0.73 0.486625
Target:  5'- cGGGCGgcggcGGAGCGCCGGCC-GGc-- -3'
miRNA:   3'- -CCUGUaua--CCUCGCGGCCGGaCCacu -5'
21719 5' -56.9 NC_004812.1 + 7269 0.67 0.834585
Target:  5'- aGACGgggagGGGGCGgCGGCCgcguGUGAg -3'
miRNA:   3'- cCUGUaua--CCUCGCgGCCGGac--CACU- -5'
21719 5' -56.9 NC_004812.1 + 10898 0.66 0.865894
Target:  5'- cGGGCGUccGucAGCGCCGGUgUGGcgGAu -3'
miRNA:   3'- -CCUGUAuaCc-UCGCGGCCGgACCa-CU- -5'
21719 5' -56.9 NC_004812.1 + 13392 0.71 0.635173
Target:  5'- cGGGgGUcgGGGGCGCggcgggggugaCGGCCggaggGGUGGc -3'
miRNA:   3'- -CCUgUAuaCCUCGCG-----------GCCGGa----CCACU- -5'
21719 5' -56.9 NC_004812.1 + 16753 0.69 0.754348
Target:  5'- gGGGCucagucggGGGGCGCgggGGCCggagGGUGAg -3'
miRNA:   3'- -CCUGuaua----CCUCGCGg--CCGGa---CCACU- -5'
21719 5' -56.9 NC_004812.1 + 17599 0.71 0.635173
Target:  5'- uGGGCGUcggaGGAcuuccGCGCCGGCCUcguguccuGGUGGu -3'
miRNA:   3'- -CCUGUAua--CCU-----CGCGGCCGGA--------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 18181 0.69 0.705663
Target:  5'- aGGGCG-AUGGGGCGCCGGCa------ -3'
miRNA:   3'- -CCUGUaUACCUCGCGGCCGgaccacu -5'
21719 5' -56.9 NC_004812.1 + 22182 0.69 0.714571
Target:  5'- cGGAUcgGcGGAGCGCCGGaggaggcgaaacaUCUGGuUGAu -3'
miRNA:   3'- -CCUGuaUaCCUCGCGGCC-------------GGACC-ACU- -5'
21719 5' -56.9 NC_004812.1 + 23414 0.67 0.850628
Target:  5'- cGGGCGUccGGcGGCGUCGGCgacgacGGUGGu -3'
miRNA:   3'- -CCUGUAuaCC-UCGCGGCCGga----CCACU- -5'
21719 5' -56.9 NC_004812.1 + 23509 0.67 0.826288
Target:  5'- cGGGCGc--GGcGGCGCCGGCUUuaugccggcGGUGGg -3'
miRNA:   3'- -CCUGUauaCC-UCGCGGCCGGA---------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 30426 0.72 0.564528
Target:  5'- cGGGCcgcgGGAGCGCCGGggugcgaaCCUGGggcgGAa -3'
miRNA:   3'- -CCUGuauaCCUCGCGGCC--------GGACCa---CU- -5'
21719 5' -56.9 NC_004812.1 + 32077 0.73 0.52503
Target:  5'- gGGGCccGUGGGGC-CCGGCCccggaggucgccUGGUGGg -3'
miRNA:   3'- -CCUGuaUACCUCGcGGCCGG------------ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 38170 0.67 0.834585
Target:  5'- aGACGgggagGGGGCGgCGGCCgcguGUGAg -3'
miRNA:   3'- cCUGUaua--CCUCGCgGCCGGac--CACU- -5'
21719 5' -56.9 NC_004812.1 + 42762 0.68 0.763804
Target:  5'- cGGGCGUGaccucuuuGGUGCUGGCCgugGGUGAc -3'
miRNA:   3'- -CCUGUAUacc-----UCGCGGCCGGa--CCACU- -5'
21719 5' -56.9 NC_004812.1 + 44166 0.68 0.800388
Target:  5'- aGGGCGcUcgGGGGCcgaGCCGGUCUgcggcgggGGUGGg -3'
miRNA:   3'- -CCUGU-AuaCCUCG---CGGCCGGA--------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 44408 0.68 0.800388
Target:  5'- gGGGCGUGgauagcccGGGGCGCCGGgCgGGa-- -3'
miRNA:   3'- -CCUGUAUa-------CCUCGCGGCCgGaCCacu -5'
21719 5' -56.9 NC_004812.1 + 46045 0.66 0.87322
Target:  5'- cGACccg-GGGGuCGCCGGCagGGUGGg -3'
miRNA:   3'- cCUGuauaCCUC-GCGGCCGgaCCACU- -5'
21719 5' -56.9 NC_004812.1 + 48259 0.67 0.834585
Target:  5'- uGGACcgGgucacgGGGGCGCUGGaggcCCUGGaGAc -3'
miRNA:   3'- -CCUGuaUa-----CCUCGCGGCC----GGACCaCU- -5'
21719 5' -56.9 NC_004812.1 + 50079 0.69 0.744787
Target:  5'- -uGCGagGUGGGGCGCgugcUGGCCgUGGUGGa -3'
miRNA:   3'- ccUGUa-UACCUCGCG----GCCGG-ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 57757 0.68 0.809182
Target:  5'- uGGGCccggAUGGAGCGCagcgucaaGGCgUGGUucGAg -3'
miRNA:   3'- -CCUGua--UACCUCGCGg-------CCGgACCA--CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.