miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 5' -56.9 NC_004812.1 + 149017 0.67 0.826288
Target:  5'- cGGGCGc--GGcGGCGCCGGCUUuaugccggcGGUGGg -3'
miRNA:   3'- -CCUGUauaCC-UCGCGGCCGGA---------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 50079 0.69 0.744787
Target:  5'- -uGCGagGUGGGGCGCgugcUGGCCgUGGUGGa -3'
miRNA:   3'- ccUGUa-UACCUCGCG----GCCGG-ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 122139 0.68 0.763804
Target:  5'- aGGACGgccUGG-GCGCgGGCCUGaGUu- -3'
miRNA:   3'- -CCUGUau-ACCuCGCGgCCGGAC-CAcu -5'
21719 5' -56.9 NC_004812.1 + 42762 0.68 0.763804
Target:  5'- cGGGCGUGaccucuuuGGUGCUGGCCgugGGUGAc -3'
miRNA:   3'- -CCUGUAUacc-----UCGCGGCCGGa--CCACU- -5'
21719 5' -56.9 NC_004812.1 + 121750 0.68 0.782361
Target:  5'- cGGCGg--GGGGCGCCGGgCCUccGG-GAg -3'
miRNA:   3'- cCUGUauaCCUCGCGGCC-GGA--CCaCU- -5'
21719 5' -56.9 NC_004812.1 + 122454 0.68 0.800388
Target:  5'- cGGGCGgcgGGGGCGCgGGCgcccCUGGcGGg -3'
miRNA:   3'- -CCUGUauaCCUCGCGgCCG----GACCaCU- -5'
21719 5' -56.9 NC_004812.1 + 138234 0.68 0.809182
Target:  5'- uGGACgAUGUGGGGCccGCgGGCCcggcgccgccGGUGGc -3'
miRNA:   3'- -CCUG-UAUACCUCG--CGgCCGGa---------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 117281 0.67 0.817818
Target:  5'- cGGGCg---GGGGCGgCGGCCUccGGUa- -3'
miRNA:   3'- -CCUGuauaCCUCGCgGCCGGA--CCAcu -5'
21719 5' -56.9 NC_004812.1 + 81095 0.67 0.826288
Target:  5'- gGGGCccGUGGcGGUGCgggCGGCgUGGUGGg -3'
miRNA:   3'- -CCUGuaUACC-UCGCG---GCCGgACCACU- -5'
21719 5' -56.9 NC_004812.1 + 122166 0.69 0.715558
Target:  5'- cGGGCc--UGG-GCGCgGGCCUGGg-- -3'
miRNA:   3'- -CCUGuauACCuCGCGgCCGGACCacu -5'
21719 5' -56.9 NC_004812.1 + 67429 0.69 0.715558
Target:  5'- aGACGgcgGGGGUGCCGGCgaGGa-- -3'
miRNA:   3'- cCUGUauaCCUCGCGGCCGgaCCacu -5'
21719 5' -56.9 NC_004812.1 + 97953 0.7 0.684695
Target:  5'- uGGCcgGUGGgguccagGGCGCCGGuCCUGGg-- -3'
miRNA:   3'- cCUGuaUACC-------UCGCGGCC-GGACCacu -5'
21719 5' -56.9 NC_004812.1 + 126996 0.73 0.486625
Target:  5'- cGGGCGgcggcGGAGCGCCGGCC-GGc-- -3'
miRNA:   3'- -CCUGUaua--CCUCGCGGCCGGaCCacu -5'
21719 5' -56.9 NC_004812.1 + 122061 0.73 0.52503
Target:  5'- gGGACu--UGG-GCGCCGGgCCUGGg-- -3'
miRNA:   3'- -CCUGuauACCuCGCGGCC-GGACCacu -5'
21719 5' -56.9 NC_004812.1 + 32077 0.73 0.52503
Target:  5'- gGGGCccGUGGGGC-CCGGCCccggaggucgccUGGUGGg -3'
miRNA:   3'- -CCUGuaUACCUCGcGGCCGG------------ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 155934 0.72 0.564528
Target:  5'- cGGGCcgcgGGAGCGCCGGggugcgaaCCUGGggcgGAa -3'
miRNA:   3'- -CCUGuauaCCUCGCGGCC--------GGACCa---CU- -5'
21719 5' -56.9 NC_004812.1 + 145350 0.72 0.574533
Target:  5'- gGGGCGgccGUGGGGCuggccguuGCCGGCCUGuccguGUGGg -3'
miRNA:   3'- -CCUGUa--UACCUCG--------CGGCCGGAC-----CACU- -5'
21719 5' -56.9 NC_004812.1 + 137040 0.72 0.574533
Target:  5'- cGGAgGUGgccGGGGUggugGCCGGCCUGGg-- -3'
miRNA:   3'- -CCUgUAUa--CCUCG----CGGCCGGACCacu -5'
21719 5' -56.9 NC_004812.1 + 17599 0.71 0.635173
Target:  5'- uGGGCGUcggaGGAcuuccGCGCCGGCCUcguguccuGGUGGu -3'
miRNA:   3'- -CCUGUAua--CCU-----CGCGGCCGGA--------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 97391 0.71 0.645315
Target:  5'- cGGGCGUG-GGcGCGCgGGCCucgggcgcguacUGGUGGg -3'
miRNA:   3'- -CCUGUAUaCCuCGCGgCCGG------------ACCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.