miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 3' -54 NC_004812.1 + 137683 1.09 0.003885
Target:  5'- cGACACGCAGAUCCUGCGCAUCAUCCAg -3'
miRNA:   3'- -CUGUGCGUCUAGGACGCGUAGUAGGU- -5'
21720 3' -54 NC_004812.1 + 99293 0.76 0.450882
Target:  5'- aGGCGCcgGCAGA-CCUGCGCGUCggCCGu -3'
miRNA:   3'- -CUGUG--CGUCUaGGACGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 127142 0.75 0.549222
Target:  5'- uGCGCGCGGGUCCcGCGCGgcccgccCGUCCc -3'
miRNA:   3'- cUGUGCGUCUAGGaCGCGUa------GUAGGu -5'
21720 3' -54 NC_004812.1 + 1634 0.75 0.549222
Target:  5'- uGCGCGCGGGUCCcGCGCGgcccgccCGUCCc -3'
miRNA:   3'- cUGUGCGUCUAGGaCGCGUa------GUAGGu -5'
21720 3' -54 NC_004812.1 + 97854 0.72 0.694794
Target:  5'- aGCACGUGGAcaUCCUGCGCGggcCcgCCGg -3'
miRNA:   3'- cUGUGCGUCU--AGGACGCGUa--GuaGGU- -5'
21720 3' -54 NC_004812.1 + 83286 0.72 0.694794
Target:  5'- cGCACGCGGAUCCagGCGCAggCAgcUCUc -3'
miRNA:   3'- cUGUGCGUCUAGGa-CGCGUa-GU--AGGu -5'
21720 3' -54 NC_004812.1 + 15544 0.72 0.715287
Target:  5'- cGGCGCGCAGcgCggagaGUGCGUCGUCCu -3'
miRNA:   3'- -CUGUGCGUCuaGga---CGCGUAGUAGGu -5'
21720 3' -54 NC_004812.1 + 119430 0.7 0.774668
Target:  5'- uGACGCuGCAGGUCCUcGCGCAcaacgCggCCGa -3'
miRNA:   3'- -CUGUG-CGUCUAGGA-CGCGUa----GuaGGU- -5'
21720 3' -54 NC_004812.1 + 19405 0.7 0.784155
Target:  5'- cGCGCGCGGucacggCCUGCGCGUgG-CCGc -3'
miRNA:   3'- cUGUGCGUCua----GGACGCGUAgUaGGU- -5'
21720 3' -54 NC_004812.1 + 142423 0.7 0.811723
Target:  5'- cGGCgACGCAGuuGUCC-GCGCGUCggCCGc -3'
miRNA:   3'- -CUG-UGCGUC--UAGGaCGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 80903 0.7 0.820584
Target:  5'- --gGCGCGGcUgCUGCGCAUCA-CCGg -3'
miRNA:   3'- cugUGCGUCuAgGACGCGUAGUaGGU- -5'
21720 3' -54 NC_004812.1 + 148885 0.69 0.829264
Target:  5'- cGACggGCGCGGAUCCcgGCGgGcgagCGUCCGg -3'
miRNA:   3'- -CUG--UGCGUCUAGGa-CGCgUa---GUAGGU- -5'
21720 3' -54 NC_004812.1 + 23377 0.69 0.829264
Target:  5'- cGACggGCGCGGAUCCcgGCGgGcgagCGUCCGg -3'
miRNA:   3'- -CUG--UGCGUCUAGGa-CGCgUa---GUAGGU- -5'
21720 3' -54 NC_004812.1 + 106500 0.69 0.837758
Target:  5'- uGGgGCGCGGGUCCgcgGCGCGgggCG-CCGg -3'
miRNA:   3'- -CUgUGCGUCUAGGa--CGCGUa--GUaGGU- -5'
21720 3' -54 NC_004812.1 + 74692 0.69 0.85415
Target:  5'- aGC-CGCGGGUagUGCGCGUCcgCCAc -3'
miRNA:   3'- cUGuGCGUCUAggACGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 61215 0.69 0.85415
Target:  5'- gGGCGCGCGGGcuUCCgggucGCGCGagucgcUCGUCCc -3'
miRNA:   3'- -CUGUGCGUCU--AGGa----CGCGU------AGUAGGu -5'
21720 3' -54 NC_004812.1 + 78406 0.69 0.861256
Target:  5'- cGACGCGCAuGAcCCUcgccgacguggcgGCGCAccucccgcUCAUCCAg -3'
miRNA:   3'- -CUGUGCGU-CUaGGA-------------CGCGU--------AGUAGGU- -5'
21720 3' -54 NC_004812.1 + 156201 0.69 0.862034
Target:  5'- cGCGCGCGGAaggCCUGCGCG-CGUg-- -3'
miRNA:   3'- cUGUGCGUCUa--GGACGCGUaGUAggu -5'
21720 3' -54 NC_004812.1 + 125300 0.69 0.862034
Target:  5'- cGCGCGCGGAaggCCUGCGCG-CGUg-- -3'
miRNA:   3'- cUGUGCGUCUa--GGACGCGUaGUAggu -5'
21720 3' -54 NC_004812.1 + 105470 0.68 0.866661
Target:  5'- gGGCGCGCGccUCCccgggguaguaggGCGCGUCGUCCc -3'
miRNA:   3'- -CUGUGCGUcuAGGa------------CGCGUAGUAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.