miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 3' -54 NC_004812.1 + 1634 0.75 0.549222
Target:  5'- uGCGCGCGGGUCCcGCGCGgcccgccCGUCCc -3'
miRNA:   3'- cUGUGCGUCUAGGaCGCGUa------GUAGGu -5'
21720 3' -54 NC_004812.1 + 3140 0.67 0.933385
Target:  5'- cGGCGCGUAGAgcaCCagcacGCGCA-CGUCCu -3'
miRNA:   3'- -CUGUGCGUCUa--GGa----CGCGUaGUAGGu -5'
21720 3' -54 NC_004812.1 + 3639 0.66 0.951945
Target:  5'- gGGCGCGCGGcgCCgccCGCGUCugcgucggCCAg -3'
miRNA:   3'- -CUGUGCGUCuaGGac-GCGUAGua------GGU- -5'
21720 3' -54 NC_004812.1 + 3829 0.67 0.904588
Target:  5'- cGACGCGgAGGUCCccGCGCAggcgCAUgagcaCCAg -3'
miRNA:   3'- -CUGUGCgUCUAGGa-CGCGUa---GUA-----GGU- -5'
21720 3' -54 NC_004812.1 + 4533 0.67 0.922614
Target:  5'- uGACGCGCGGGUUCUGCaGCcagc-CCAu -3'
miRNA:   3'- -CUGUGCGUCUAGGACG-CGuaguaGGU- -5'
21720 3' -54 NC_004812.1 + 4648 0.68 0.884361
Target:  5'- gGGCGCGCcggcggccucguAGcgCCgGCGCGccUCGUCCAc -3'
miRNA:   3'- -CUGUGCG------------UCuaGGaCGCGU--AGUAGGU- -5'
21720 3' -54 NC_004812.1 + 14187 0.68 0.877146
Target:  5'- cGACGCGCGGAcaaCUGCGUcgCcgcgCCAg -3'
miRNA:   3'- -CUGUGCGUCUag-GACGCGuaGua--GGU- -5'
21720 3' -54 NC_004812.1 + 15544 0.72 0.715287
Target:  5'- cGGCGCGCAGcgCggagaGUGCGUCGUCCu -3'
miRNA:   3'- -CUGUGCGUCuaGga---CGCGUAGUAGGu -5'
21720 3' -54 NC_004812.1 + 15962 0.66 0.951945
Target:  5'- cGGCGCGUGGcgCCgccGCGCGgcggcgCGUCUAc -3'
miRNA:   3'- -CUGUGCGUCuaGGa--CGCGUa-----GUAGGU- -5'
21720 3' -54 NC_004812.1 + 18930 0.68 0.869702
Target:  5'- uGAUGCGCAGGaUCUGCGUGUCGUa-- -3'
miRNA:   3'- -CUGUGCGUCUaGGACGCGUAGUAggu -5'
21720 3' -54 NC_004812.1 + 19405 0.7 0.784155
Target:  5'- cGCGCGCGGucacggCCUGCGCGUgG-CCGc -3'
miRNA:   3'- cUGUGCGUCua----GGACGCGUAgUaGGU- -5'
21720 3' -54 NC_004812.1 + 23377 0.69 0.829264
Target:  5'- cGACggGCGCGGAUCCcgGCGgGcgagCGUCCGg -3'
miRNA:   3'- -CUG--UGCGUCUAGGa-CGCgUa---GUAGGU- -5'
21720 3' -54 NC_004812.1 + 26572 0.66 0.955976
Target:  5'- uGGC-UGCAGAaCCcGCGCGUCAccgCCGg -3'
miRNA:   3'- -CUGuGCGUCUaGGaCGCGUAGUa--GGU- -5'
21720 3' -54 NC_004812.1 + 33821 0.66 0.955976
Target:  5'- -uCACGCAGGUCCUG-GCcc--UCCAc -3'
miRNA:   3'- cuGUGCGUCUAGGACgCGuaguAGGU- -5'
21720 3' -54 NC_004812.1 + 34662 0.66 0.951945
Target:  5'- cGGCGC-CAGggCCaGCGCGUCccCCAg -3'
miRNA:   3'- -CUGUGcGUCuaGGaCGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 38792 0.67 0.933385
Target:  5'- cACGCGCGuGGUCUgcgggGCGCucucgagcUCGUCCAg -3'
miRNA:   3'- cUGUGCGU-CUAGGa----CGCGu-------AGUAGGU- -5'
21720 3' -54 NC_004812.1 + 42583 0.66 0.943157
Target:  5'- cGACGCGCgcgccgacggcgAGAccgUgCUGCGCAUCGUagCCGc -3'
miRNA:   3'- -CUGUGCG------------UCU---AgGACGCGUAGUA--GGU- -5'
21720 3' -54 NC_004812.1 + 57318 0.68 0.898086
Target:  5'- cGACGCGCAGGUCUgccgGCGCcuggaccCCAc -3'
miRNA:   3'- -CUGUGCGUCUAGGa---CGCGuagua--GGU- -5'
21720 3' -54 NC_004812.1 + 61215 0.69 0.85415
Target:  5'- gGGCGCGCGGGcuUCCgggucGCGCGagucgcUCGUCCc -3'
miRNA:   3'- -CUGUGCGUCU--AGGa----CGCGU------AGUAGGu -5'
21720 3' -54 NC_004812.1 + 64738 0.66 0.938395
Target:  5'- uGCGCGCccccGggCCguacucgaUGCGCAUCAUCUAc -3'
miRNA:   3'- cUGUGCGu---CuaGG--------ACGCGUAGUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.