miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 3' -54 NC_004812.1 + 107982 0.67 0.922614
Target:  5'- aGAgAgGCGGGgcguUCCcgcacGCGCGUCGUCCGg -3'
miRNA:   3'- -CUgUgCGUCU----AGGa----CGCGUAGUAGGU- -5'
21720 3' -54 NC_004812.1 + 76824 0.68 0.884361
Target:  5'- cGGCGCGCAccuccgggggcGcgCCUGCGCggCGUCgGg -3'
miRNA:   3'- -CUGUGCGU-----------CuaGGACGCGuaGUAGgU- -5'
21720 3' -54 NC_004812.1 + 130156 0.68 0.884361
Target:  5'- gGGCGCGCcggcggccucguAGcgCCgGCGCGccUCGUCCAc -3'
miRNA:   3'- -CUGUGCG------------UCuaGGaCGCGU--AGUAGGU- -5'
21720 3' -54 NC_004812.1 + 93183 0.68 0.895418
Target:  5'- cGACACccagauGCAGAUCCUGuCGCGggcgcugaaaaaGUCCGa -3'
miRNA:   3'- -CUGUG------CGUCUAGGAC-GCGUag----------UAGGU- -5'
21720 3' -54 NC_004812.1 + 85160 0.68 0.898086
Target:  5'- gGACGCGCucgccGAgugCCUGCGggcCAUgGUCCAc -3'
miRNA:   3'- -CUGUGCGu----CUa--GGACGC---GUAgUAGGU- -5'
21720 3' -54 NC_004812.1 + 129337 0.67 0.904588
Target:  5'- cGACGCGgAGGUCCccGCGCAggcgCAUgagcaCCAg -3'
miRNA:   3'- -CUGUGCgUCUAGGa-CGCGUa---GUA-----GGU- -5'
21720 3' -54 NC_004812.1 + 106073 0.67 0.91023
Target:  5'- uGGCGCGUGGGUgucgcggCCUGCGCcUCcucuGUCCGa -3'
miRNA:   3'- -CUGUGCGUCUA-------GGACGCGuAG----UAGGU- -5'
21720 3' -54 NC_004812.1 + 146060 0.67 0.910845
Target:  5'- cGGCACGCAGAac--GCGCGUgAUUCAc -3'
miRNA:   3'- -CUGUGCGUCUaggaCGCGUAgUAGGU- -5'
21720 3' -54 NC_004812.1 + 91666 0.67 0.922614
Target:  5'- cACugGguGGUCgUGUGCGUCAgaauggCCu -3'
miRNA:   3'- cUGugCguCUAGgACGCGUAGUa-----GGu -5'
21720 3' -54 NC_004812.1 + 125300 0.69 0.862034
Target:  5'- cGCGCGCGGAaggCCUGCGCG-CGUg-- -3'
miRNA:   3'- cUGUGCGUCUa--GGACGCGUaGUAggu -5'
21720 3' -54 NC_004812.1 + 74692 0.69 0.85415
Target:  5'- aGC-CGCGGGUagUGCGCGUCcgCCAc -3'
miRNA:   3'- cUGuGCGUCUAggACGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 61215 0.69 0.85415
Target:  5'- gGGCGCGCGGGcuUCCgggucGCGCGagucgcUCGUCCc -3'
miRNA:   3'- -CUGUGCGUCU--AGGa----CGCGU------AGUAGGu -5'
21720 3' -54 NC_004812.1 + 99293 0.76 0.450882
Target:  5'- aGGCGCcgGCAGA-CCUGCGCGUCggCCGu -3'
miRNA:   3'- -CUGUG--CGUCUaGGACGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 127142 0.75 0.549222
Target:  5'- uGCGCGCGGGUCCcGCGCGgcccgccCGUCCc -3'
miRNA:   3'- cUGUGCGUCUAGGaCGCGUa------GUAGGu -5'
21720 3' -54 NC_004812.1 + 83286 0.72 0.694794
Target:  5'- cGCACGCGGAUCCagGCGCAggCAgcUCUc -3'
miRNA:   3'- cUGUGCGUCUAGGa-CGCGUa-GU--AGGu -5'
21720 3' -54 NC_004812.1 + 15544 0.72 0.715287
Target:  5'- cGGCGCGCAGcgCggagaGUGCGUCGUCCu -3'
miRNA:   3'- -CUGUGCGUCuaGga---CGCGUAGUAGGu -5'
21720 3' -54 NC_004812.1 + 19405 0.7 0.784155
Target:  5'- cGCGCGCGGucacggCCUGCGCGUgG-CCGc -3'
miRNA:   3'- cUGUGCGUCua----GGACGCGUAgUaGGU- -5'
21720 3' -54 NC_004812.1 + 142423 0.7 0.811723
Target:  5'- cGGCgACGCAGuuGUCC-GCGCGUCggCCGc -3'
miRNA:   3'- -CUG-UGCGUC--UAGGaCGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 148885 0.69 0.829264
Target:  5'- cGACggGCGCGGAUCCcgGCGgGcgagCGUCCGg -3'
miRNA:   3'- -CUG--UGCGUCUAGGa-CGCgUa---GUAGGU- -5'
21720 3' -54 NC_004812.1 + 106500 0.69 0.837758
Target:  5'- uGGgGCGCGGGUCCgcgGCGCGgggCG-CCGg -3'
miRNA:   3'- -CUgUGCGUCUAGGa--CGCGUa--GUaGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.