miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 3' -55.2 NC_004812.1 + 47261 0.73 0.649108
Target:  5'- cGGUGGCCGA-GUCuACGG-CGcCCCGg -3'
miRNA:   3'- -CCACCGGCUaCAGcUGUCuGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 17421 0.68 0.89609
Target:  5'- uGGUGGUgGGggcgGgggUGGCGGcCGUCCCGu -3'
miRNA:   3'- -CCACCGgCUa---Ca--GCUGUCuGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 146072 0.67 0.902456
Target:  5'- cGUGGaCCa--GUCGACGGGCGcgagcgagcgcUCCCGg -3'
miRNA:   3'- cCACC-GGcuaCAGCUGUCUGU-----------AGGGC- -5'
21721 3' -55.2 NC_004812.1 + 71970 0.66 0.95336
Target:  5'- uGGUGGCCGuc--UGGCGcGGCGUCgCCa -3'
miRNA:   3'- -CCACCGGCuacaGCUGU-CUGUAG-GGc -5'
21721 3' -55.2 NC_004812.1 + 35288 0.69 0.820792
Target:  5'- -cUGGCCGAggcGUCGcCcgGGugGUCCCGc -3'
miRNA:   3'- ccACCGGCUa--CAGCuG--UCugUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 18816 0.69 0.832502
Target:  5'- cGG-GGCgGGUGUgCGGCGGGCGgcgguugcgcgccgCCCGg -3'
miRNA:   3'- -CCaCCGgCUACA-GCUGUCUGUa-------------GGGC- -5'
21721 3' -55.2 NC_004812.1 + 115231 0.68 0.875656
Target:  5'- --cGGCCGugagGUagaaGAC-GACGUCCCGg -3'
miRNA:   3'- ccaCCGGCua--CAg---CUGuCUGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 150387 0.68 0.882687
Target:  5'- cGG-GGCCGcgG-CGGCAGgggcgGCGUCCgCGg -3'
miRNA:   3'- -CCaCCGGCuaCaGCUGUC-----UGUAGG-GC- -5'
21721 3' -55.2 NC_004812.1 + 31828 0.68 0.889499
Target:  5'- nGGgGGuCCGggGUCGcCGGGgGUCCUGg -3'
miRNA:   3'- -CCaCC-GGCuaCAGCuGUCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 44059 0.68 0.889499
Target:  5'- aGGUccaGGCCGAgGUCGAcCAGcAUAUCCa- -3'
miRNA:   3'- -CCA---CCGGCUaCAGCU-GUC-UGUAGGgc -5'
21721 3' -55.2 NC_004812.1 + 31880 0.68 0.889499
Target:  5'- nGGgGGuCCGggGUCGcCGGGgGUCCUGg -3'
miRNA:   3'- -CCaCC-GGCuaCAGCuGUCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 31802 0.68 0.889499
Target:  5'- nGGgGGuCCGggGUCGcCGGGgGUCCUGg -3'
miRNA:   3'- -CCaCC-GGCuaCAGCuGUCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 36806 0.72 0.67937
Target:  5'- aGG-GGCCGccGggCGGCAGGCAgacCCCGg -3'
miRNA:   3'- -CCaCCGGCuaCa-GCUGUCUGUa--GGGC- -5'
21721 3' -55.2 NC_004812.1 + 59319 0.68 0.889499
Target:  5'- cGUGGUCGAcggggGUcgggucccaCGACAGGCAcCCCGc -3'
miRNA:   3'- cCACCGGCUa----CA---------GCUGUCUGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 128675 0.71 0.748242
Target:  5'- cGGUGGCCGGcgGUCuuccGGgAGGCGgggcgCCCGg -3'
miRNA:   3'- -CCACCGGCUa-CAG----CUgUCUGUa----GGGC- -5'
21721 3' -55.2 NC_004812.1 + 31776 0.68 0.889499
Target:  5'- uGGgGGuCCGggGUCGcCGGGgGUCCUGg -3'
miRNA:   3'- -CCaCC-GGCuaCAGCuGUCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 113026 0.68 0.889499
Target:  5'- cGGcUGGCCGgcGUUGACgucAGGCGcCCCc -3'
miRNA:   3'- -CC-ACCGGCuaCAGCUG---UCUGUaGGGc -5'
21721 3' -55.2 NC_004812.1 + 89533 0.67 0.899937
Target:  5'- cGGUGGUCGAccgccUGgCGGCGGACccggaggcucagCCCGa -3'
miRNA:   3'- -CCACCGGCU-----ACaGCUGUCUGua----------GGGC- -5'
21721 3' -55.2 NC_004812.1 + 79710 0.7 0.773666
Target:  5'- gGGUGGCCcccGccGUCcuggccacccuccgGGCGGACAUCCCc -3'
miRNA:   3'- -CCACCGG---CuaCAG--------------CUGUCUGUAGGGc -5'
21721 3' -55.2 NC_004812.1 + 52829 0.69 0.837414
Target:  5'- uGGUGGCCuGggG-CGACGGccACAcgCCCGa -3'
miRNA:   3'- -CCACCGG-CuaCaGCUGUC--UGUa-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.