miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 5' -56.6 NC_004812.1 + 138301 1.08 0.003162
Target:  5'- gCACCGGAACCUGUCGCGGUCCUACUCc -3'
miRNA:   3'- -GUGGCCUUGGACAGCGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 56256 0.79 0.24693
Target:  5'- gCGCCGGAACCgUGgcccCGCGGuUCCUGCUg -3'
miRNA:   3'- -GUGGCCUUGG-ACa---GCGCC-AGGAUGAg -5'
21721 5' -56.6 NC_004812.1 + 125206 0.74 0.467925
Target:  5'- gGCgCGGcGCCUG-C-CGGUCCUGCUCg -3'
miRNA:   3'- gUG-GCCuUGGACaGcGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 33947 0.74 0.496107
Target:  5'- gGCCucggggGGGGCCgggGUCGCGGUCCccgaGCUCc -3'
miRNA:   3'- gUGG------CCUUGGa--CAGCGCCAGGa---UGAG- -5'
21721 5' -56.6 NC_004812.1 + 115526 0.73 0.534814
Target:  5'- -cCCGGGACCUGg-GCGGUUCUAUg- -3'
miRNA:   3'- guGGCCUUGGACagCGCCAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 133355 0.73 0.534814
Target:  5'- gGCCGuGGACCUGgCGCagguaGGUCCcGCUCa -3'
miRNA:   3'- gUGGC-CUUGGACaGCG-----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 112010 0.72 0.564528
Target:  5'- gACgCGGGccacgagcaccACCUGUCGCGGgCCUACg- -3'
miRNA:   3'- gUG-GCCU-----------UGGACAGCGCCaGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 146859 0.72 0.604764
Target:  5'- gCGCCGcGGGCCUgGUgGCGGUCCc-CUCc -3'
miRNA:   3'- -GUGGC-CUUGGA-CAgCGCCAGGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 85665 0.71 0.625029
Target:  5'- uGCCGGGGCggGUUGCGGUCCcccgACg- -3'
miRNA:   3'- gUGGCCUUGgaCAGCGCCAGGa---UGag -5'
21721 5' -56.6 NC_004812.1 + 94498 0.71 0.635173
Target:  5'- gGCCGGGGCCaGcgCGCGGUUCUGgUg -3'
miRNA:   3'- gUGGCCUUGGaCa-GCGCCAGGAUgAg -5'
21721 5' -56.6 NC_004812.1 + 90840 0.7 0.675647
Target:  5'- gCGCCGGcGCCggcgcacguaGUCGCGGUgCUcCUCg -3'
miRNA:   3'- -GUGGCCuUGGa---------CAGCGCCAgGAuGAG- -5'
21721 5' -56.6 NC_004812.1 + 59910 0.7 0.685699
Target:  5'- gCACCGcGuGCCcGUCGCGGUCCa---- -3'
miRNA:   3'- -GUGGC-CuUGGaCAGCGCCAGGaugag -5'
21721 5' -56.6 NC_004812.1 + 68041 0.7 0.685699
Target:  5'- cCACUGGGGCgaGagGCGGUacgCCUGCUUg -3'
miRNA:   3'- -GUGGCCUUGgaCagCGCCA---GGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 116598 0.7 0.695707
Target:  5'- cCGCCGcGGGCCgccgcgucUGUCGCGG-CC-GCUCg -3'
miRNA:   3'- -GUGGC-CUUGG--------ACAGCGCCaGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 112511 0.7 0.705663
Target:  5'- aGgCGGGcCCUGUucuacgccacCGCGGUCCUGCg- -3'
miRNA:   3'- gUgGCCUuGGACA----------GCGCCAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 73920 0.69 0.744787
Target:  5'- gGCCGGcGCCca--GCGGcgCCUGCUCg -3'
miRNA:   3'- gUGGCCuUGGacagCGCCa-GGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 61568 0.69 0.744787
Target:  5'- gCGCCGGGACCccccUCGCGGaUCCgGCg- -3'
miRNA:   3'- -GUGGCCUUGGac--AGCGCC-AGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 28194 0.69 0.772215
Target:  5'- uCGCCGGcGCC-GUCGaguaccuCGG-CCUGCUCg -3'
miRNA:   3'- -GUGGCCuUGGaCAGC-------GCCaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 153702 0.69 0.772215
Target:  5'- uCGCCGGcGCC-GUCGaguaccuCGG-CCUGCUCg -3'
miRNA:   3'- -GUGGCCuUGGaCAGC-------GCCaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 79923 0.68 0.778689
Target:  5'- cCugCGGGACCUGUuuccCGCGGcccccgagacgccCCUGCUg -3'
miRNA:   3'- -GugGCCUUGGACA----GCGCCa------------GGAUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.