miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 5' -56.6 NC_004812.1 + 99699 0.66 0.88723
Target:  5'- cCGCCaGGGACUcgGUCGCGG-CCgcgGCg- -3'
miRNA:   3'- -GUGG-CCUUGGa-CAGCGCCaGGa--UGag -5'
21721 5' -56.6 NC_004812.1 + 81016 0.67 0.850628
Target:  5'- gCGCCGcGACCaGcgCGCGGUCCgACUg -3'
miRNA:   3'- -GUGGCcUUGGaCa-GCGCCAGGaUGAg -5'
21721 5' -56.6 NC_004812.1 + 83147 0.67 0.865894
Target:  5'- gCGCCaGGAACCUGagGCccUCCUGCa- -3'
miRNA:   3'- -GUGG-CCUUGGACagCGccAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 151552 0.67 0.865894
Target:  5'- gGCCGGGGCCgGgggCGCGGcgCC--CUCg -3'
miRNA:   3'- gUGGCCUUGGaCa--GCGCCa-GGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 141408 0.66 0.87322
Target:  5'- uGCUGGAgcgcGCCUGcCGCaGcGUCCUcCUCu -3'
miRNA:   3'- gUGGCCU----UGGACaGCG-C-CAGGAuGAG- -5'
21721 5' -56.6 NC_004812.1 + 85860 0.66 0.880334
Target:  5'- gACCGG-GCgaGUgGCGGgUCUGCUCc -3'
miRNA:   3'- gUGGCCuUGgaCAgCGCCaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 97166 0.66 0.880334
Target:  5'- uCGCCGGggUC-GUCGUGGgggucgucgucgUCCUggcgggGCUCa -3'
miRNA:   3'- -GUGGCCuuGGaCAGCGCC------------AGGA------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 86018 0.66 0.88723
Target:  5'- uGCCGGGGCgUGg-GCGGUCaggaaCUGCUa -3'
miRNA:   3'- gUGGCCUUGgACagCGCCAG-----GAUGAg -5'
21721 5' -56.6 NC_004812.1 + 35823 0.66 0.88723
Target:  5'- gGCUGGGcgucGCC-GUCGCGGUaCUUGCg- -3'
miRNA:   3'- gUGGCCU----UGGaCAGCGCCA-GGAUGag -5'
21721 5' -56.6 NC_004812.1 + 75876 0.67 0.850628
Target:  5'- aCGCCGccuccaGGGCCaggGUCGCGGUCUUGgcgUUCg -3'
miRNA:   3'- -GUGGC------CUUGGa--CAGCGCCAGGAU---GAG- -5'
21721 5' -56.6 NC_004812.1 + 65195 0.67 0.842701
Target:  5'- gACCGGGACgUG-CGCGacuUCgUGCUCa -3'
miRNA:   3'- gUGGCCUUGgACaGCGCc--AGgAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 123696 0.67 0.834585
Target:  5'- gACCGGAGCUUuauUCGCcgcgGGUCC-ACUCc -3'
miRNA:   3'- gUGGCCUUGGAc--AGCG----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 33947 0.74 0.496107
Target:  5'- gGCCucggggGGGGCCgggGUCGCGGUCCccgaGCUCc -3'
miRNA:   3'- gUGG------CCUUGGa--CAGCGCCAGGa---UGAG- -5'
21721 5' -56.6 NC_004812.1 + 94498 0.71 0.635173
Target:  5'- gGCCGGGGCCaGcgCGCGGUUCUGgUg -3'
miRNA:   3'- gUGGCCUUGGaCa-GCGCCAGGAUgAg -5'
21721 5' -56.6 NC_004812.1 + 90840 0.7 0.675647
Target:  5'- gCGCCGGcGCCggcgcacguaGUCGCGGUgCUcCUCg -3'
miRNA:   3'- -GUGGCCuUGGa---------CAGCGCCAgGAuGAG- -5'
21721 5' -56.6 NC_004812.1 + 59910 0.7 0.685699
Target:  5'- gCACCGcGuGCCcGUCGCGGUCCa---- -3'
miRNA:   3'- -GUGGC-CuUGGaCAGCGCCAGGaugag -5'
21721 5' -56.6 NC_004812.1 + 68041 0.7 0.685699
Target:  5'- cCACUGGGGCgaGagGCGGUacgCCUGCUUg -3'
miRNA:   3'- -GUGGCCUUGgaCagCGCCA---GGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 153702 0.69 0.772215
Target:  5'- uCGCCGGcGCC-GUCGaguaccuCGG-CCUGCUCg -3'
miRNA:   3'- -GUGGCCuUGGaCAGC-------GCCaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 153535 0.68 0.809182
Target:  5'- cCGCCuGGACCgacgcgCGCGGcggccucuccuUCCUGCUCg -3'
miRNA:   3'- -GUGGcCUUGGaca---GCGCC-----------AGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 15049 0.67 0.834585
Target:  5'- uCACCGGGACCUGgagGCGGaCUgGCg- -3'
miRNA:   3'- -GUGGCCUUGGACag-CGCCaGGaUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.