miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 5' -56.6 NC_004812.1 + 8234 0.68 0.800388
Target:  5'- -cCCGGuACCUGgcCGCGGUCgacgaCUACUUg -3'
miRNA:   3'- guGGCCuUGGACa-GCGCCAG-----GAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 8379 0.66 0.887908
Target:  5'- cCGCCGGGGCC---CGgGGUCCgggggcgcggcggggGCUCg -3'
miRNA:   3'- -GUGGCCUUGGacaGCgCCAGGa--------------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 9119 0.66 0.900356
Target:  5'- cCACCGGAcccccgcggcGCCacgGUCGC---CCUGCUCu -3'
miRNA:   3'- -GUGGCCU----------UGGa--CAGCGccaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 14570 0.67 0.858362
Target:  5'- -cCCGGGGCCUGcUCGUccucGUCCUccggggccaGCUCg -3'
miRNA:   3'- guGGCCUUGGAC-AGCGc---CAGGA---------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 15049 0.67 0.834585
Target:  5'- uCACCGGGACCUGgagGCGGaCUgGCg- -3'
miRNA:   3'- -GUGGCCUUGGACag-CGCCaGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 23635 0.66 0.906578
Target:  5'- cCGCCGGGGCg---CGCGGUCCccGCg- -3'
miRNA:   3'- -GUGGCCUUGgacaGCGCCAGGa-UGag -5'
21721 5' -56.6 NC_004812.1 + 26043 0.67 0.865894
Target:  5'- gGCCGGGGCCgGgggCGCGGcgCC--CUCg -3'
miRNA:   3'- gUGGCCUUGGaCa--GCGCCa-GGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 28026 0.68 0.809182
Target:  5'- cCGCCuGGACCgacgcgCGCGGcggccucuccuUCCUGCUCg -3'
miRNA:   3'- -GUGGcCUUGGaca---GCGCC-----------AGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 28194 0.69 0.772215
Target:  5'- uCGCCGGcGCC-GUCGaguaccuCGG-CCUGCUCg -3'
miRNA:   3'- -GUGGCCuUGGaCAGC-------GCCaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 33947 0.74 0.496107
Target:  5'- gGCCucggggGGGGCCgggGUCGCGGUCCccgaGCUCc -3'
miRNA:   3'- gUGG------CCUUGGa--CAGCGCCAGGa---UGAG- -5'
21721 5' -56.6 NC_004812.1 + 35823 0.66 0.88723
Target:  5'- gGCUGGGcgucGCC-GUCGCGGUaCUUGCg- -3'
miRNA:   3'- gUGGCCU----UGGaCAGCGCCA-GGAUGag -5'
21721 5' -56.6 NC_004812.1 + 39280 0.66 0.887908
Target:  5'- cCGCCGGGGCC---CGgGGUCCgggggcgcggcggggGCUCg -3'
miRNA:   3'- -GUGGCCUUGGacaGCgCCAGGa--------------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 45188 0.67 0.842701
Target:  5'- gGCCGGAGCCcGgcggCGCGG-CCgGCa- -3'
miRNA:   3'- gUGGCCUUGGaCa---GCGCCaGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 48753 0.66 0.88723
Target:  5'- -cCCGGcuCCU-UCGCGGgCCUGCUg -3'
miRNA:   3'- guGGCCuuGGAcAGCGCCaGGAUGAg -5'
21721 5' -56.6 NC_004812.1 + 51120 0.67 0.842701
Target:  5'- cCGCCGGGcCCgGUCGCcugcuccGUCCUccGCUCc -3'
miRNA:   3'- -GUGGCCUuGGaCAGCGc------CAGGA--UGAG- -5'
21721 5' -56.6 NC_004812.1 + 56256 0.79 0.24693
Target:  5'- gCGCCGGAACCgUGgcccCGCGGuUCCUGCUg -3'
miRNA:   3'- -GUGGCCUUGG-ACa---GCGCC-AGGAUGAg -5'
21721 5' -56.6 NC_004812.1 + 59910 0.7 0.685699
Target:  5'- gCACCGcGuGCCcGUCGCGGUCCa---- -3'
miRNA:   3'- -GUGGC-CuUGGaCAGCGCCAGGaugag -5'
21721 5' -56.6 NC_004812.1 + 61568 0.69 0.744787
Target:  5'- gCGCCGGGACCccccUCGCGGaUCCgGCg- -3'
miRNA:   3'- -GUGGCCUUGGac--AGCGCC-AGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 65195 0.67 0.842701
Target:  5'- gACCGGGACgUG-CGCGacuUCgUGCUCa -3'
miRNA:   3'- gUGGCCUUGgACaGCGCc--AGgAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 68041 0.7 0.685699
Target:  5'- cCACUGGGGCgaGagGCGGUacgCCUGCUUg -3'
miRNA:   3'- -GUGGCCUUGgaCagCGCCA---GGAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.