miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 3' -56.8 NC_004812.1 + 138512 1.07 0.003693
Target:  5'- uACUCCCACACGUACCACGACGGCUCGc -3'
miRNA:   3'- -UGAGGGUGUGCAUGGUGCUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 43145 0.77 0.314234
Target:  5'- cACUCCCGCAgGguccgcgacACCGCGGCGGCcCGg -3'
miRNA:   3'- -UGAGGGUGUgCa--------UGGUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 84810 0.77 0.336012
Target:  5'- aAC-CCC-CAC--GCCACGACGGCUCGg -3'
miRNA:   3'- -UGaGGGuGUGcaUGGUGCUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 58068 0.75 0.424958
Target:  5'- gACUCCCucgGCGccCUGCGACGGCUCGu -3'
miRNA:   3'- -UGAGGGug-UGCauGGUGCUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 120768 0.74 0.460609
Target:  5'- gAC-CCCGCGCugcugcgcaaGUACCGCGACGGCg-- -3'
miRNA:   3'- -UGaGGGUGUG----------CAUGGUGCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 109299 0.74 0.460609
Target:  5'- uGCgcgCCCGCACGUACgCGcCGGCGGCg-- -3'
miRNA:   3'- -UGa--GGGUGUGCAUG-GU-GCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 81701 0.74 0.479018
Target:  5'- cGCgcgCCUGCACGcgcGCCugGACGcGCUCGg -3'
miRNA:   3'- -UGa--GGGUGUGCa--UGGugCUGC-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 108507 0.74 0.497781
Target:  5'- aGCgCCCGCACGggGCgCACGGCGGCg-- -3'
miRNA:   3'- -UGaGGGUGUGCa-UG-GUGCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 6987 0.73 0.526519
Target:  5'- cGCcCCCAuCGCGUcgcacgaacaucGCCGCGGCGGgUCGg -3'
miRNA:   3'- -UGaGGGU-GUGCA------------UGGUGCUGCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 132496 0.73 0.526519
Target:  5'- cGCcCCCAuCGCGUcgcacgaacaucGCCGCGGCGGgUCGg -3'
miRNA:   3'- -UGaGGGU-GUGCA------------UGGUGCUGCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 43809 0.73 0.527488
Target:  5'- gGCgcgCCCACACGcccgacgggggagccGCCGCG-CGGCUCGc -3'
miRNA:   3'- -UGa--GGGUGUGCa--------------UGGUGCuGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 25181 0.73 0.536238
Target:  5'- cGCUCCgGgGCGgcgUCGCGGCGGCUCc -3'
miRNA:   3'- -UGAGGgUgUGCau-GGUGCUGCCGAGc -5'
21722 3' -56.8 NC_004812.1 + 54153 0.73 0.54602
Target:  5'- gGCUCCCggcggcgggACACGUACCGCGcccGCGuGUUCu -3'
miRNA:   3'- -UGAGGG---------UGUGCAUGGUGC---UGC-CGAGc -5'
21722 3' -56.8 NC_004812.1 + 106401 0.73 0.555857
Target:  5'- cGCUCCuCGCGCGacagcgggggGCCGCGGC-GCUCGa -3'
miRNA:   3'- -UGAGG-GUGUGCa---------UGGUGCUGcCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 55645 0.72 0.605686
Target:  5'- cGCUCgCGgACGU-CCGCGGCGGCgCGc -3'
miRNA:   3'- -UGAGgGUgUGCAuGGUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 53399 0.72 0.615736
Target:  5'- aGCUCCCGCACGUAcagcuCCACGAgCGcGUUg- -3'
miRNA:   3'- -UGAGGGUGUGCAU-----GGUGCU-GC-CGAgc -5'
21722 3' -56.8 NC_004812.1 + 57975 0.71 0.635864
Target:  5'- cGCgCCCGgGCGcagcgcgGCCGCGACGGCcgCGa -3'
miRNA:   3'- -UGaGGGUgUGCa------UGGUGCUGCCGa-GC- -5'
21722 3' -56.8 NC_004812.1 + 118950 0.71 0.635864
Target:  5'- uGCcCCCGCugGUgugggACUGCGACGGcCUCa -3'
miRNA:   3'- -UGaGGGUGugCA-----UGGUGCUGCC-GAGc -5'
21722 3' -56.8 NC_004812.1 + 142723 0.71 0.645928
Target:  5'- -gUUCCGCACGUcacuuACUACGACGGgUCc -3'
miRNA:   3'- ugAGGGUGUGCA-----UGGUGCUGCCgAGc -5'
21722 3' -56.8 NC_004812.1 + 82695 0.71 0.645928
Target:  5'- gGCg-CCGCugGgcgccgGCCgACGGCGGCUCGc -3'
miRNA:   3'- -UGagGGUGugCa-----UGG-UGCUGCCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.